miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 3' -52.6 NC_007605.1 + 14943 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 18012 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 21081 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 24149 0.69 0.955327
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCu -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 27218 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 30287 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 33356 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 48557 0.68 0.966237
Target:  5'- --aCUCCUCAggCACGAguuuaccaacaggCGGUACCa -3'
miRNA:   3'- gggGAGGAGUa-GUGCUaaa----------GCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 50405 0.71 0.870981
Target:  5'- cCCCCguggCCUUuggCACGGgccUGGCACCc -3'
miRNA:   3'- -GGGGa---GGAGua-GUGCUaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 51360 0.69 0.933109
Target:  5'- uCCCCUCCUCccaacugCugGAgccggUCGGaggagGCCg -3'
miRNA:   3'- -GGGGAGGAGua-----GugCUaa---AGCCg----UGG- -5'
33300 3' -52.6 NC_007605.1 + 52052 0.7 0.916933
Target:  5'- uCCCCUCCUCuacUGCGAcg--GGCACUc -3'
miRNA:   3'- -GGGGAGGAGua-GUGCUaaagCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 53418 1.15 0.003399
Target:  5'- gCCCCUCCUCAUCACGAUUUCGGCACCa -3'
miRNA:   3'- -GGGGAGGAGUAGUGCUAAAGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 59447 0.66 0.985321
Target:  5'- aCCCC-CCUUAUCucuCGg---CGGCuGCCg -3'
miRNA:   3'- -GGGGaGGAGUAGu--GCuaaaGCCG-UGG- -5'
33300 3' -52.6 NC_007605.1 + 59516 0.68 0.965917
Target:  5'- cCCCCUCUccuUCAagGCGGgcaagCGGCGgCg -3'
miRNA:   3'- -GGGGAGG---AGUagUGCUaaa--GCCGUgG- -5'
33300 3' -52.6 NC_007605.1 + 61785 0.68 0.962606
Target:  5'- gCCgCCUCCUgCA-CACGAg--CGGCcaggGCCu -3'
miRNA:   3'- -GG-GGAGGA-GUaGUGCUaaaGCCG----UGG- -5'
33300 3' -52.6 NC_007605.1 + 73373 0.67 0.983329
Target:  5'- aCCCCUUCUCAUCccaccugGCGGaggUCGucucCACCc -3'
miRNA:   3'- -GGGGAGGAGUAG-------UGCUaa-AGCc---GUGG- -5'
33300 3' -52.6 NC_007605.1 + 73921 0.68 0.971909
Target:  5'- uCCCCUggCCUCggC-CGAUcUCGuGCGCUa -3'
miRNA:   3'- -GGGGA--GGAGuaGuGCUAaAGC-CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 74424 0.69 0.947141
Target:  5'- gCCCUCgUCAggcCGCGAgaggaUGGCAUCg -3'
miRNA:   3'- gGGGAGgAGUa--GUGCUaaa--GCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 75755 0.7 0.904958
Target:  5'- gUCCUCCUcCAUCugGGgggUGGCAUa -3'
miRNA:   3'- gGGGAGGA-GUAGugCUaaaGCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 76089 0.68 0.971909
Target:  5'- uCCCgUCCg-GUCACGucucaugUUGGCAUCa -3'
miRNA:   3'- -GGGgAGGagUAGUGCuaa----AGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.