miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 3' -52.6 NC_007605.1 + 50405 0.71 0.870981
Target:  5'- cCCCCguggCCUUuggCACGGgccUGGCACCc -3'
miRNA:   3'- -GGGGa---GGAGua-GUGCUaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 115812 0.66 0.991069
Target:  5'- aCCCgUCCg-GUCACugaaGAgagUCuGGCACCa -3'
miRNA:   3'- -GGGgAGGagUAGUG----CUaa-AG-CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 155896 0.66 0.989835
Target:  5'- gCCCUCUUgGgCACGc---UGGCGCCa -3'
miRNA:   3'- gGGGAGGAgUaGUGCuaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 105258 0.66 0.988471
Target:  5'- cCCCCgagugCC-CGUCGCGugucugaGGUGCCa -3'
miRNA:   3'- -GGGGa----GGaGUAGUGCuaaag--CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 151137 0.66 0.988471
Target:  5'- gCCCCagCUcCGUCACGGgg--GGCGCa -3'
miRNA:   3'- -GGGGagGA-GUAGUGCUaaagCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 119078 0.66 0.988471
Target:  5'- gUCCUguUCCUauuaGUCACagccuguaGAUUUgGGCACCc -3'
miRNA:   3'- -GGGG--AGGAg---UAGUG--------CUAAAgCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 159546 0.67 0.983518
Target:  5'- aCgCCUCCUCcUCGCc---UCGGC-CCa -3'
miRNA:   3'- -GgGGAGGAGuAGUGcuaaAGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 150609 0.67 0.983518
Target:  5'- gCCCUCC-CGg-GCGGUgggCGGC-CCg -3'
miRNA:   3'- gGGGAGGaGUagUGCUAaa-GCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 127313 0.67 0.983518
Target:  5'- gCCCgCUUCAuUCACGGggcCGuGCACCu -3'
miRNA:   3'- gGGGaGGAGU-AGUGCUaaaGC-CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 155778 0.68 0.969016
Target:  5'- aCCCCUgUUUAUC-CGAUggaaugaCGGCGCa -3'
miRNA:   3'- -GGGGAgGAGUAGuGCUAaa-----GCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 105334 0.7 0.904334
Target:  5'- gCCCUCCgcCAUCAgGcgUUCccacgggGGCGCCc -3'
miRNA:   3'- gGGGAGGa-GUAGUgCuaAAG-------CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 75755 0.7 0.904958
Target:  5'- gUCCUCCUcCAUCugGGgggUGGCAUa -3'
miRNA:   3'- gGGGAGGA-GUAGugCUaaaGCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 90265 0.7 0.922564
Target:  5'- gCCCCUCCUUA-C-CGAUUcUGGCugUu -3'
miRNA:   3'- -GGGGAGGAGUaGuGCUAAaGCCGugG- -5'
33300 3' -52.6 NC_007605.1 + 114682 0.7 0.927956
Target:  5'- cCCCUUCCUCAUacaGCGGg--UGGCuAUCu -3'
miRNA:   3'- -GGGGAGGAGUAg--UGCUaaaGCCG-UGG- -5'
33300 3' -52.6 NC_007605.1 + 51360 0.69 0.933109
Target:  5'- uCCCCUCCUCccaacugCugGAgccggUCGGaggagGCCg -3'
miRNA:   3'- -GGGGAGGAGua-----GugCUaa---AGCCg----UGG- -5'
33300 3' -52.6 NC_007605.1 + 74424 0.69 0.947141
Target:  5'- gCCCUCgUCAggcCGCGAgaggaUGGCAUCg -3'
miRNA:   3'- gGGGAGgAGUa--GUGCUaaa--GCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 61785 0.68 0.962606
Target:  5'- gCCgCCUCCUgCA-CACGAg--CGGCcaggGCCu -3'
miRNA:   3'- -GG-GGAGGA-GUaGUGCUaaaGCCG----UGG- -5'
33300 3' -52.6 NC_007605.1 + 116097 0.66 0.988327
Target:  5'- cCCCCUCCUCGugcaccuauuuguUCccgacACGGUUaUGGCAg- -3'
miRNA:   3'- -GGGGAGGAGU-------------AG-----UGCUAAaGCCGUgg -5'
33300 3' -52.6 NC_007605.1 + 171463 0.75 0.700905
Target:  5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3'
miRNA:   3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5'
33300 3' -52.6 NC_007605.1 + 170925 0.75 0.700905
Target:  5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3'
miRNA:   3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.