miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 65508 0.66 0.751854
Target:  5'- uAUGGCCUccauGGGCCucgGGGUgcagGGCCUGgCCg -3'
miRNA:   3'- -UACUGGG----UCCGG---UCCGa---UUGGAC-GGa -5'
33302 3' -59.6 NC_007605.1 + 55770 0.66 0.751854
Target:  5'- -aGGCCaCAccGGCCAGGCccAACaUUGCCUc -3'
miRNA:   3'- uaCUGG-GU--CCGGUCCGa-UUG-GACGGA- -5'
33302 3' -59.6 NC_007605.1 + 21932 0.66 0.751854
Target:  5'- -aGACCCGGGUCucGGCcAGCCgagcgaccgGCCc -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa--------CGGa -5'
33302 3' -59.6 NC_007605.1 + 160297 0.66 0.750899
Target:  5'- -aGAUCCAGGgcccguuCCAGGCUcuCCaGCCc -3'
miRNA:   3'- uaCUGGGUCC-------GGUCCGAuuGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 99988 0.66 0.750899
Target:  5'- cAUG-CCCAGGCUaauggucaagaugAGGCaggcuucgUGugCUGCCUg -3'
miRNA:   3'- -UACuGGGUCCGG-------------UCCG--------AUugGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 4632 0.66 0.742263
Target:  5'- -cGGCCCAGagacgguguugcGCCAGucGCUGcGCCUGCUg -3'
miRNA:   3'- uaCUGGGUC------------CGGUC--CGAU-UGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 159483 0.66 0.742263
Target:  5'- -gGGCgCCggacGGGCCGGGCUcucgugccccAGCCgGCCg -3'
miRNA:   3'- uaCUG-GG----UCCGGUCCGA----------UUGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 134811 0.66 0.742263
Target:  5'- -cGugCCAGGCCgccaugcucaGGGCcacGGCgUGCCa -3'
miRNA:   3'- uaCugGGUCCGG----------UCCGa--UUGgACGGa -5'
33302 3' -59.6 NC_007605.1 + 45473 0.66 0.741298
Target:  5'- -gGACCUgcucgggGGGCCAGGCc-ACCaUGCUa -3'
miRNA:   3'- uaCUGGG-------UCCGGUCCGauUGG-ACGGa -5'
33302 3' -59.6 NC_007605.1 + 155390 0.66 0.741298
Target:  5'- ---cCCCAcGGCCaccaacgAGGCUGACCUGauCCUg -3'
miRNA:   3'- uacuGGGU-CCGG-------UCCGAUUGGAC--GGA- -5'
33302 3' -59.6 NC_007605.1 + 84635 0.66 0.732577
Target:  5'- aGUGGgCCgacgGGGCCAGGCU--CUUGCUg -3'
miRNA:   3'- -UACUgGG----UCCGGUCCGAuuGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 160851 0.66 0.722806
Target:  5'- -cGGCCgAGGCCugcgacgcGGuGCUGACCggcucgGCCa -3'
miRNA:   3'- uaCUGGgUCCGG--------UC-CGAUUGGa-----CGGa -5'
33302 3' -59.6 NC_007605.1 + 45148 0.66 0.722806
Target:  5'- gAUGugCCAuGCCccAGGCUAaggGCCUGgCUg -3'
miRNA:   3'- -UACugGGUcCGG--UCCGAU---UGGACgGA- -5'
33302 3' -59.6 NC_007605.1 + 54247 0.66 0.722806
Target:  5'- cUGACCgAGGCCgAGGC-GGCCgagGUCc -3'
miRNA:   3'- uACUGGgUCCGG-UCCGaUUGGa--CGGa -5'
33302 3' -59.6 NC_007605.1 + 135070 0.66 0.722806
Target:  5'- cUGGCUCAGGUCcGGCgc-CCUGCg- -3'
miRNA:   3'- uACUGGGUCCGGuCCGauuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 73315 0.66 0.712958
Target:  5'- cUGGCCCcGGCagguGGcCUGGCCgGCCa -3'
miRNA:   3'- uACUGGGuCCGgu--CC-GAUUGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 10569 0.66 0.712958
Target:  5'- -aGGCCCGGGcCCAGGC---CUUGCa- -3'
miRNA:   3'- uaCUGGGUCC-GGUCCGauuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 150717 0.66 0.703043
Target:  5'- cGUGACau-GGCCAGGCcugguGCCaGCCg -3'
miRNA:   3'- -UACUGgguCCGGUCCGau---UGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 84681 0.66 0.699059
Target:  5'- -gGGCCCAGGCaaagguugccauGGCUccAGCCgaGCCUg -3'
miRNA:   3'- uaCUGGGUCCGgu----------CCGA--UUGGa-CGGA- -5'
33302 3' -59.6 NC_007605.1 + 161506 0.67 0.693068
Target:  5'- -gGGCCgGGGCguGGacaggAACCUGCUg -3'
miRNA:   3'- uaCUGGgUCCGguCCga---UUGGACGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.