miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33307 3' -53.8 NC_007605.1 + 164921 0.66 0.972511
Target:  5'- --gUGUGGCCG-CCGG-CCAGGc--- -3'
miRNA:   3'- guuGCACCGGCaGGCCaGGUUCuuac -5'
33307 3' -53.8 NC_007605.1 + 126366 0.66 0.972511
Target:  5'- ----uUGGCCGggCCGGgcccCCGGGggUGu -3'
miRNA:   3'- guugcACCGGCa-GGCCa---GGUUCuuAC- -5'
33307 3' -53.8 NC_007605.1 + 112516 0.68 0.938907
Target:  5'- gAGCuccGGCCGUgUGG-CCGAGGAUGa -3'
miRNA:   3'- gUUGca-CCGGCAgGCCaGGUUCUUAC- -5'
33307 3' -53.8 NC_007605.1 + 142728 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141913 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142015 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142117 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142219 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142321 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142423 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142525 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141811 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141608 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141506 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141404 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141302 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141098 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 140996 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 140894 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 142830 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.