miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33322 5' -57.6 NC_007605.1 + 140636 0.66 0.851887
Target:  5'- cGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 39139 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 161675 0.66 0.869864
Target:  5'- -aCAGGuUGCCAGGCAccacaucuaugacguUgcucucuucgUGGGCCCgGGa -3'
miRNA:   3'- ccGUCU-ACGGUCCGU---------------A----------AUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 38765 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 54445 0.66 0.866214
Target:  5'- uGGCAucgGCCGccguccuGGCGcgaaagaGGGCCCCGGc -3'
miRNA:   3'- -CCGUcuaCGGU-------CCGUaa-----UCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 39014 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 79876 0.66 0.851887
Target:  5'- uGGacaaGGAcagGCCGGGUcccccGGCCCUGGa -3'
miRNA:   3'- -CCg---UCUa--CGGUCCGuaau-CCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 121568 0.66 0.851887
Target:  5'- -----cUGCCAGGUAUguccugGGGUCCCGa -3'
miRNA:   3'- ccgucuACGGUCCGUAa-----UCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 39389 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 145956 0.66 0.851887
Target:  5'- aGGCAGGUGCacuuGGCucuUUAGGagggaCCCu- -3'
miRNA:   3'- -CCGUCUACGgu--CCGu--AAUCCg----GGGcc -5'
33322 5' -57.6 NC_007605.1 + 39639 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 39264 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 38265 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 48004 0.66 0.859517
Target:  5'- gGGCcgugGCCAGGgGUUaccgAGGCCUCGu -3'
miRNA:   3'- -CCGucuaCGGUCCgUAA----UCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 159746 0.66 0.881195
Target:  5'- aGCGGuuggGCCgAGGCGaggaggAGGCguCCCGGg -3'
miRNA:   3'- cCGUCua--CGG-UCCGUaa----UCCG--GGGCC- -5'
33322 5' -57.6 NC_007605.1 + 38890 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 38390 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 38515 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 39514 0.66 0.859517
Target:  5'- gGGCA---GCCGGGguUccUGGcGCUCCGGg -3'
miRNA:   3'- -CCGUcuaCGGUCCguA--AUC-CGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 92083 0.66 0.859517
Target:  5'- cGGCGug-GCUGGaGUAggAGGCCCgGGg -3'
miRNA:   3'- -CCGUcuaCGGUC-CGUaaUCCGGGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.