miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33322 5' -57.6 NC_007605.1 + 21743 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 63045 0.74 0.454682
Target:  5'- uGCGGcgGCCgucuggcgcgcaGGGCugcuGGCCCCGGg -3'
miRNA:   3'- cCGUCuaCGG------------UCCGuaauCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 67754 0.72 0.529747
Target:  5'- uGGCAGAaucaCCAGaGCccagaggAGGCCCCGGc -3'
miRNA:   3'- -CCGUCUac--GGUC-CGuaa----UCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 91413 0.72 0.529747
Target:  5'- aGGCAGggGCC-GGUu---GGCCCaCGGg -3'
miRNA:   3'- -CCGUCuaCGGuCCGuaauCCGGG-GCC- -5'
33322 5' -57.6 NC_007605.1 + 27937 0.72 0.566006
Target:  5'- uGGCAGA-GCCGGGCGauccucugagacccUccGGgCCCGGa -3'
miRNA:   3'- -CCGUCUaCGGUCCGU--------------AauCCgGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 45069 0.71 0.578905
Target:  5'- cGGUcaaGGGUGUCcuuGGCGUccgggUGGGCCCCGa -3'
miRNA:   3'- -CCG---UCUACGGu--CCGUA-----AUCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 12536 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 15605 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 18674 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 143155 0.74 0.428035
Target:  5'- aGGCcggacccuGGUGCCAGGCA--GGGaCCCCGc -3'
miRNA:   3'- -CCGu-------CUACGGUCCGUaaUCC-GGGGCc -5'
33322 5' -57.6 NC_007605.1 + 40340 0.74 0.428035
Target:  5'- aGGCcggacccuGGUGCCAGGCA--GGGaCCCCGc -3'
miRNA:   3'- -CCGu-------CUACGGUCCGUaaUCC-GGGGCc -5'
33322 5' -57.6 NC_007605.1 + 71812 0.75 0.410792
Target:  5'- aGGCaccGGAUGCCcccGGCuccacGGCCCCGGc -3'
miRNA:   3'- -CCG---UCUACGGu--CCGuaau-CCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 12382 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 15451 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 18520 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 21589 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 24658 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 27727 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 30796 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 33865 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.