miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33322 5' -57.6 NC_007605.1 + 2090 0.66 0.866948
Target:  5'- aGCAGGUuCUcaGCAaucagGGGCCCCGGg -3'
miRNA:   3'- cCGUCUAcGGucCGUaa---UCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 2690 0.75 0.393986
Target:  5'- aGCAGAUGCCAgGGCGgc-GGCCCgGc -3'
miRNA:   3'- cCGUCUACGGU-CCGUaauCCGGGgCc -5'
33322 5' -57.6 NC_007605.1 + 3865 0.66 0.874176
Target:  5'- cGGCAGGU-CCAGGgGaccuaCCCCGGg -3'
miRNA:   3'- -CCGUCUAcGGUCCgUaauccGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 5208 0.68 0.775426
Target:  5'- uGGCAcGGccUGCCAgGGCAgagucccuGGCCCCa- -3'
miRNA:   3'- -CCGU-CU--ACGGU-CCGUaau-----CCGGGGcc -5'
33322 5' -57.6 NC_007605.1 + 6119 0.67 0.810995
Target:  5'- gGGCAGAggacauugGgCAGGUG-UGGGCCaCGGg -3'
miRNA:   3'- -CCGUCUa-------CgGUCCGUaAUCCGGgGCC- -5'
33322 5' -57.6 NC_007605.1 + 11156 0.7 0.639016
Target:  5'- aGGCGGG-GCUGGGCAaagGGGUCCuaCGGg -3'
miRNA:   3'- -CCGUCUaCGGUCCGUaa-UCCGGG--GCC- -5'
33322 5' -57.6 NC_007605.1 + 12382 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 12502 0.67 0.836059
Target:  5'- uGGCucc-GCCGGGU----GGCCCUGGg -3'
miRNA:   3'- -CCGucuaCGGUCCGuaauCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 12536 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 12955 0.69 0.728253
Target:  5'- uGGCcccgaGGAggcGCCAGGCGcgGGGCCggUCGGc -3'
miRNA:   3'- -CCG-----UCUa--CGGUCCGUaaUCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 13941 0.67 0.844066
Target:  5'- gGGCuGGgccGCCAGGgGggcaaaagGGGCUCUGGa -3'
miRNA:   3'- -CCGuCUa--CGGUCCgUaa------UCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 14704 0.67 0.807542
Target:  5'- uGGCGGA-GUCAGcGaCGgugaugaagguGGCCCCGGg -3'
miRNA:   3'- -CCGUCUaCGGUC-C-GUaau--------CCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 15451 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 15571 0.67 0.836059
Target:  5'- uGGCucc-GCCGGGU----GGCCCUGGg -3'
miRNA:   3'- -CCGucuaCGGUCCGuaauCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 15605 0.71 0.588871
Target:  5'- aGGCAGAggGUC-GGCc-UAGGCCCgGGg -3'
miRNA:   3'- -CCGUCUa-CGGuCCGuaAUCCGGGgCC- -5'
33322 5' -57.6 NC_007605.1 + 16024 0.69 0.728253
Target:  5'- uGGCcccgaGGAggcGCCAGGCGcgGGGCCggUCGGc -3'
miRNA:   3'- -CCG-----UCUa--CGGUCCGUaaUCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 17010 0.67 0.844066
Target:  5'- gGGCuGGgccGCCAGGgGggcaaaagGGGCUCUGGa -3'
miRNA:   3'- -CCGuCUa--CGGUCCgUaa------UCCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 17773 0.67 0.807542
Target:  5'- uGGCGGA-GUCAGcGaCGgugaugaagguGGCCCCGGg -3'
miRNA:   3'- -CCGUCUaCGGUC-C-GUaau--------CCGGGGCC- -5'
33322 5' -57.6 NC_007605.1 + 18520 0.75 0.410792
Target:  5'- aGGCAGG-GCCccccGGCAgcuGGCCCCGa -3'
miRNA:   3'- -CCGUCUaCGGu---CCGUaauCCGGGGCc -5'
33322 5' -57.6 NC_007605.1 + 18640 0.67 0.836059
Target:  5'- uGGCucc-GCCGGGU----GGCCCUGGg -3'
miRNA:   3'- -CCGucuaCGGUCCGuaauCCGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.