Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33324 | 3' | -56.7 | NC_007605.1 | + | 123462 | 0.66 | 0.896497 |
Target: 5'- gGUGGAGGaaguCUUCGgugGGCagCCCGCACUu -3' miRNA: 3'- -CACUUCC----GGAGCauaCCG--GGGUGUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 91749 | 0.66 | 0.896497 |
Target: 5'- --cGGGGCCUCGgcccUGGCCUCuuccCGCUc -3' miRNA: 3'- cacUUCCGGAGCau--ACCGGGGu---GUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 55950 | 0.66 | 0.896497 |
Target: 5'- gGUGu-GGCCUC----GGCCCCAgGCg -3' miRNA: 3'- -CACuuCCGGAGcauaCCGGGGUgUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 67668 | 0.66 | 0.895845 |
Target: 5'- aUGGAGGCCccCGgcUGGCCgCCguggccaacgcagGCACg -3' miRNA: 3'- cACUUCCGGa-GCauACCGG-GG-------------UGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 56238 | 0.66 | 0.88987 |
Target: 5'- --uGAGGCggCGggaggGGCCCCAUACUc -3' miRNA: 3'- cacUUCCGgaGCaua--CCGGGGUGUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 67096 | 0.66 | 0.883017 |
Target: 5'- uUGcAGGGCCUCGUcggccaugAUGGCCUC-UGCg -3' miRNA: 3'- cAC-UUCCGGAGCA--------UACCGGGGuGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 21932 | 0.66 | 0.878089 |
Target: 5'- -aGAcccGGGUCUCGgccagccgagcgaccGGCCCCGCGCc -3' miRNA: 3'- caCU---UCCGGAGCaua------------CCGGGGUGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 163676 | 0.66 | 0.875944 |
Target: 5'- uUGAAGGCCUCGguUAUuGCCaCCGCc-- -3' miRNA: 3'- cACUUCCGGAGC--AUAcCGG-GGUGuga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 36821 | 0.66 | 0.875944 |
Target: 5'- uUGuGGGCCUUGUGgcaaaauaaGGCCCCGguCACc -3' miRNA: 3'- cACuUCCGGAGCAUa--------CCGGGGU--GUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 53583 | 0.66 | 0.875944 |
Target: 5'- gGUGGAGGCUgccaggGGCCUgGCGCUn -3' miRNA: 3'- -CACUUCCGGagcauaCCGGGgUGUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 88090 | 0.66 | 0.868653 |
Target: 5'- -aGGAGGCgUCacuauGUGaGGCCCCGCGg- -3' miRNA: 3'- caCUUCCGgAG-----CAUaCCGGGGUGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 91941 | 0.67 | 0.853444 |
Target: 5'- --aGAGGCCagGgccgaGGCCCCGCGCc -3' miRNA: 3'- cacUUCCGGagCaua--CCGGGGUGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 86574 | 0.67 | 0.845538 |
Target: 5'- -cGuGGGCCUUagAUGGCCCC-CAUg -3' miRNA: 3'- caCuUCCGGAGcaUACCGGGGuGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 8491 | 0.67 | 0.837438 |
Target: 5'- aGUGggGGCacgCGUcaGcCCCCACACg -3' miRNA: 3'- -CACuuCCGga-GCAuaCcGGGGUGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 124764 | 0.67 | 0.837438 |
Target: 5'- cGUGggGGCUgucaagacCGUGgccucGGCCCUACAg- -3' miRNA: 3'- -CACuuCCGGa-------GCAUa----CCGGGGUGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 51566 | 0.68 | 0.812057 |
Target: 5'- -gGucGGCCaUCGUGaGGCCCCGgcCGCg -3' miRNA: 3'- caCuuCCGG-AGCAUaCCGGGGU--GUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 164908 | 0.68 | 0.803261 |
Target: 5'- cUGuuGGCCUCcuGUGUGGCCgccggCCAgGCUg -3' miRNA: 3'- cACuuCCGGAG--CAUACCGG-----GGUgUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 5079 | 0.68 | 0.794311 |
Target: 5'- cGUGAAGGCCgccaGgaggcuuucAUGGCCCCugGu- -3' miRNA: 3'- -CACUUCCGGag--Ca--------UACCGGGGugUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 53556 | 0.68 | 0.794311 |
Target: 5'- --uGGGGCCUCGgcUGGCUCC-CAgUa -3' miRNA: 3'- cacUUCCGGAGCauACCGGGGuGUgA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 48461 | 0.68 | 0.766623 |
Target: 5'- cGUGggGGCCggGg--GGCCCUGC-CUg -3' miRNA: 3'- -CACuuCCGGagCauaCCGGGGUGuGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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