miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 3' -56.5 NC_007605.1 + 78163 0.66 0.909061
Target:  5'- -gUCACUGCUgGGGUgggGCUggUGGCa- -3'
miRNA:   3'- uaGGUGACGAgUCCA---UGGuuGCCGgg -5'
33338 3' -56.5 NC_007605.1 + 78205 0.66 0.909061
Target:  5'- -gUCACUGCUgGGGUgggGCUggUGGCa- -3'
miRNA:   3'- uaGGUGACGAgUCCA---UGGuuGCCGgg -5'
33338 3' -56.5 NC_007605.1 + 2099 0.66 0.902895
Target:  5'- -gCCACUaGCagCAGGUucucagcaAUCAGgGGCCCc -3'
miRNA:   3'- uaGGUGA-CGa-GUCCA--------UGGUUgCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 73310 0.66 0.902895
Target:  5'- uUCCACUgGCcccggCAGGUgGCCuggcCGGCCa -3'
miRNA:   3'- uAGGUGA-CGa----GUCCA-UGGuu--GCCGGg -5'
33338 3' -56.5 NC_007605.1 + 142808 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142605 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140669 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140770 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140872 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140974 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142503 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142401 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142299 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142095 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141993 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141789 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141586 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141484 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141382 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141280 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.