miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 28098 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 12209 0.66 0.555377
Target:  5'- -aGGGgGACCCgAGGGCCuuagaGGCCc- -3'
miRNA:   3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5'
33345 5' -63.3 NC_007605.1 + 31166 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 25029 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 12753 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 18891 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 158622 0.66 0.545788
Target:  5'- -cGGGCuGCUCUGGGGuCUGCGcACCg- -3'
miRNA:   3'- caCCCGuUGGGGUCCC-GGCGC-UGGau -5'
33345 5' -63.3 NC_007605.1 + 170389 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 170911 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 34235 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 141002 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 40251 0.66 0.577608
Target:  5'- -gGGGCAgccgcggcccagcgcGCCCCguucacgGGGGaggaCCGCGGCCg- -3'
miRNA:   3'- caCCCGU---------------UGGGG-------UCCC----GGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 169851 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 62543 0.66 0.584414
Target:  5'- -aGGGCcGCCuCCAGauGGCCGaGGCCg- -3'
miRNA:   3'- caCCCGuUGG-GGUC--CCGGCgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 21960 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 3163 0.66 0.555377
Target:  5'- -cGGGCucggagaaauggGGCCggCCAGGGCCacGgGACCUGg -3'
miRNA:   3'- caCCCG------------UUGG--GGUCCCGG--CgCUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 55754 0.66 0.584414
Target:  5'- -gGGGCG--CCUGGGGCCGaGGCCa- -3'
miRNA:   3'- caCCCGUugGGGUCCCGGCgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 15822 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 171449 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 50367 0.66 0.574696
Target:  5'- gGUGGGCuGCCCCcgaggacGGGCgC-CGGCCg- -3'
miRNA:   3'- -CACCCGuUGGGGu------CCCG-GcGCUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.