miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 38424 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 49572 0.71 0.318881
Target:  5'- ---aGCAGCCUCcGGGCCGCGACUUc -3'
miRNA:   3'- caccCGUUGGGGuCCCGGCGCUGGAu -5'
33345 5' -63.3 NC_007605.1 + 61254 0.71 0.325917
Target:  5'- -aGGGcCGGagCCGGGGCCGgGGCCUGc -3'
miRNA:   3'- caCCC-GUUggGGUCCCGGCgCUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 124540 0.7 0.332347
Target:  5'- -aGGGCAucgACCCCaaacuguAGGGCCGaGGCCa- -3'
miRNA:   3'- caCCCGU---UGGGG-------UCCCGGCgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 47666 0.7 0.355202
Target:  5'- -gGGGCAGgcCCCCAGcuucugaggcGGCUGUGGCCUc -3'
miRNA:   3'- caCCCGUU--GGGGUC----------CCGGCGCUGGAu -5'
33345 5' -63.3 NC_007605.1 + 115450 0.69 0.386291
Target:  5'- -aGGGUgcucGACCU--GGGCCGCGGCCa- -3'
miRNA:   3'- caCCCG----UUGGGguCCCGGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 50539 0.69 0.410757
Target:  5'- -gGGGCGgccaagccggACCCCAGGGCgGguGCCUGg -3'
miRNA:   3'- caCCCGU----------UGGGGUCCCGgCgcUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 170642 0.69 0.410757
Target:  5'- -gGGGUccgcgGGCUCCGGGGCUGCGGgCg- -3'
miRNA:   3'- caCCCG-----UUGGGGUCCCGGCGCUgGau -5'
33345 5' -63.3 NC_007605.1 + 38299 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 104075 0.71 0.305155
Target:  5'- -gGGGCugccACCCCcGGGCCGUggaaugagGGCCUGa -3'
miRNA:   3'- caCCCGu---UGGGGuCCCGGCG--------CUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 58566 0.72 0.285422
Target:  5'- -cGGGgGugCCCGGGGCCGCauCCUu -3'
miRNA:   3'- caCCCgUugGGGUCCCGGCGcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 34511 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 105073 0.75 0.158433
Target:  5'- uUGGGCaAACCCCgGGGGCCGCGcUCUc -3'
miRNA:   3'- cACCCG-UUGGGG-UCCCGGCGCuGGAu -5'
33345 5' -63.3 NC_007605.1 + 13028 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 16097 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 19166 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 22235 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 25304 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 28373 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 31442 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.