miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 2687 0.68 0.48043
Target:  5'- -cGGaGCAgAUgCCAGGGCgGCGGCCc- -3'
miRNA:   3'- caCC-CGU-UGgGGUCCCGgCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 3163 0.66 0.555377
Target:  5'- -cGGGCucggagaaauggGGCCggCCAGGGCCacGgGACCUGg -3'
miRNA:   3'- caCCCG------------UUGG--GGUCCCGG--CgCUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 3935 0.68 0.46245
Target:  5'- -aGGGCAagggaggaGCCCCAccGGGCCugguccaGACCUGa -3'
miRNA:   3'- caCCCGU--------UGGGGU--CCCGGcg-----CUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 4474 0.66 0.555377
Target:  5'- -cGGGU-GCCCgUGGGGUCGUGGCCa- -3'
miRNA:   3'- caCCCGuUGGG-GUCCCGGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 5307 0.68 0.436163
Target:  5'- cUGcGUGGCCuCCGGGGCUGCGuCCUGc -3'
miRNA:   3'- cACcCGUUGG-GGUCCCGGCGCuGGAU- -5'
33345 5' -63.3 NC_007605.1 + 8333 0.66 0.574696
Target:  5'- gGUGGGCGGgCCaagauaGGGGCgcgauugcUGCGAUCUGg -3'
miRNA:   3'- -CACCCGUUgGGg-----UCCCG--------GCGCUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 12209 0.66 0.555377
Target:  5'- -aGGGgGACCCgAGGGCCuuagaGGCCc- -3'
miRNA:   3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5'
33345 5' -63.3 NC_007605.1 + 12592 0.68 0.453594
Target:  5'- -cGGGCGccuCCUCGGGGCCaGCuGCCg- -3'
miRNA:   3'- caCCCGUu--GGGGUCCCGG-CGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 12753 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 13028 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 15278 0.68 0.471397
Target:  5'- -aGGGgGACCCgAGGGCCuuagaGGCCa- -3'
miRNA:   3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5'
33345 5' -63.3 NC_007605.1 + 15661 0.68 0.453594
Target:  5'- -cGGGCGccuCCUCGGGGCCaGCuGCCg- -3'
miRNA:   3'- caCCCGUu--GGGGUCCCGG-CGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 15822 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 16097 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 18347 0.68 0.471397
Target:  5'- -aGGGgGACCCgAGGGCCuuagaGGCCa- -3'
miRNA:   3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5'
33345 5' -63.3 NC_007605.1 + 18730 0.68 0.453594
Target:  5'- -cGGGCGccuCCUCGGGGCCaGCuGCCg- -3'
miRNA:   3'- caCCCGUu--GGGGUCCCGG-CGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 18891 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 19166 0.73 0.21651
Target:  5'- -cGGGCGGCCCCAGaGGCCGguuCCUc -3'
miRNA:   3'- caCCCGUUGGGGUC-CCGGCgcuGGAu -5'
33345 5' -63.3 NC_007605.1 + 21416 0.68 0.471397
Target:  5'- -aGGGgGACCCgAGGGCCuuagaGGCCa- -3'
miRNA:   3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5'
33345 5' -63.3 NC_007605.1 + 21799 0.68 0.453594
Target:  5'- -cGGGCGccuCCUCGGGGCCaGCuGCCg- -3'
miRNA:   3'- caCCCGUu--GGGGUCCCGG-CGcUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.