Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 169686 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 170224 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 170746 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 171284 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 56390 | 0.67 | 1 |
Target: 5'- ---cCAAGGGGACGu--CCACg -3' miRNA: 3'- gauaGUUCCUUUGUuuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 139562 | 0.69 | 1 |
Target: 5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3' miRNA: 3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 150571 | 0.69 | 1 |
Target: 5'- --uUCAGGGucACGAGACCGg- -3' miRNA: 3'- gauAGUUCCuuUGUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 154812 | 0.69 | 1 |
Target: 5'- aUGUCGAuGGGGAUGAGGCCGgUg -3' miRNA: 3'- gAUAGUU-CCUUUGUUUUGGUgA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 106432 | 0.73 | 1 |
Target: 5'- -aGUCGAGGgcGCGuuGACCACg -3' miRNA: 3'- gaUAGUUCCuuUGUu-UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96601 | 0.73 | 1 |
Target: 5'- -gGUCGAGGAgguaGugGAGGCCGCc -3' miRNA: 3'- gaUAGUUCCU----UugUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96553 | 0.73 | 1 |
Target: 5'- -gGUCGAGGAGGCAguggAGGCCGg- -3' miRNA: 3'- gaUAGUUCCUUUGU----UUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 53986 | 0.66 | 1 |
Target: 5'- -aGUC-AGGAggUAcauGGGCCACUg -3' miRNA: 3'- gaUAGuUCCUuuGU---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 44654 | 0.71 | 1 |
Target: 5'- -gGUCAAGGccguggaugcGCAGGACCACg -3' miRNA: 3'- gaUAGUUCCuu--------UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 139379 | 0.71 | 1 |
Target: 5'- ----gAGGGAAACAuGACCACc -3' miRNA: 3'- gauagUUCCUUUGUuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 125681 | 0.71 | 1 |
Target: 5'- gCUGUCAuGGccAAACAAuGCCACa -3' miRNA: 3'- -GAUAGUuCC--UUUGUUuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40244 | 0.7 | 1 |
Target: 5'- -gGUCcAGGggGCA--GCCGCg -3' miRNA: 3'- gaUAGuUCCuuUGUuuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 57645 | 0.7 | 1 |
Target: 5'- --uUCGAGGGAGCu--GCCugUg -3' miRNA: 3'- gauAGUUCCUUUGuuuUGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 166909 | 0.69 | 1 |
Target: 5'- ---aCAAGGAAAgAAGGCCAg- -3' miRNA: 3'- gauaGUUCCUUUgUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 130262 | 0.69 | 1 |
Target: 5'- ---gCAGGGGAAUucAGGCCGCUa -3' miRNA: 3'- gauaGUUCCUUUGu-UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 83631 | 0.69 | 1 |
Target: 5'- -aGUCAGGGGggGACAAuguCCACc -3' miRNA: 3'- gaUAGUUCCU--UUGUUuu-GGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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