miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 51673 0.67 1
Target:  5'- uGGCCacgGUGGg--GGGCCuGGCCu -3'
miRNA:   3'- uUCGGa--UACCuaaCCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 18685 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 12547 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 15616 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 155256 0.67 1
Target:  5'- aGGGCCUGguaGGA--GGGCCAggagcugucuucacGCCg -3'
miRNA:   3'- -UUCGGAUa--CCUaaCCUGGU--------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 21754 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 27892 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 24823 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 34029 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 94961 0.66 1
Target:  5'- aAAGCUcacgGcGAaacUUGGGCCAGCCc -3'
miRNA:   3'- -UUCGGaua-C-CU---AACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 58088 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcggagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 13391 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 58058 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcggagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 139930 0.66 1
Target:  5'- --cCCgg-GGAUcGGACUAGCCu -3'
miRNA:   3'- uucGGauaCCUAaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 74679 0.66 1
Target:  5'- cGAGCCgagAUaGAUcUGGGCCuGCCc -3'
miRNA:   3'- -UUCGGa--UAcCUA-ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 153916 0.66 1
Target:  5'- cAGGCgUccggGGAggGGGCCAggGCCu -3'
miRNA:   3'- -UUCGgAua--CCUaaCCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 58118 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcagagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 30960 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 48101 0.66 1
Target:  5'- uAGGCCUGUGGAgcgcuGCUuuGCCa -3'
miRNA:   3'- -UUCGGAUACCUaacc-UGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 48455 0.67 1
Target:  5'- gGAGCUcGUGGGggccgggGGGCCcuGCCu -3'
miRNA:   3'- -UUCGGaUACCUaa-----CCUGGu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.