Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33376 | 5' | -42.5 | NC_007605.1 | + | 371 | 0.68 | 0.999996 |
Target: 5'- -uGCCUAacaUGGAggauugaGGACCcACCu -3' miRNA: 3'- uuCGGAU---ACCUaa-----CCUGGuUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 744 | 0.74 | 0.997631 |
Target: 5'- gGGGCCUA-GGuacucUUGGugCAGCCc -3' miRNA: 3'- -UUCGGAUaCCu----AACCugGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 2858 | 0.66 | 1 |
Target: 5'- gGGGCCgGUGGcggucUGGuaguACCAGCCc -3' miRNA: 3'- -UUCGGaUACCua---ACC----UGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 2899 | 0.68 | 0.999997 |
Target: 5'- aAGGCCUGuUGGcgccGGGCCGccGCCc -3' miRNA: 3'- -UUCGGAU-ACCuaa-CCUGGU--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 2934 | 0.72 | 0.999577 |
Target: 5'- cAGCC-AUGGAgcGGACUGACg -3' miRNA: 3'- uUCGGaUACCUaaCCUGGUUGg -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 3163 | 0.68 | 0.999997 |
Target: 5'- cGGGCUc--GGAgaaaugGGGCCGGCCa -3' miRNA: 3'- -UUCGGauaCCUaa----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 3665 | 0.69 | 0.999992 |
Target: 5'- cAGCCcg-GGGUagguccccUGGACCuGCCg -3' miRNA: 3'- uUCGGauaCCUA--------ACCUGGuUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 9454 | 0.66 | 1 |
Target: 5'- aGGGCCcaguUGGcaaGUUGuACCAACCa -3' miRNA: 3'- -UUCGGau--ACC---UAACcUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 12547 | 0.67 | 1 |
Target: 5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3' miRNA: 3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 12762 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 12893 | 0.7 | 0.999937 |
Target: 5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3' miRNA: 3'- -UUCGGAUACCua-ACcUGGu---UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 13391 | 0.66 | 1 |
Target: 5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3' miRNA: 3'- -UUCGGaUACCUaaCCUGG--UUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 14536 | 0.73 | 0.998944 |
Target: 5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3' miRNA: 3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 14759 | 0.67 | 0.999999 |
Target: 5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3' miRNA: 3'- -UUCGGaua---CCUAACCuGGU--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 15616 | 0.67 | 1 |
Target: 5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3' miRNA: 3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 15831 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 15962 | 0.7 | 0.999937 |
Target: 5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3' miRNA: 3'- -UUCGGAUACCua-ACcUGGu---UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 16460 | 0.66 | 1 |
Target: 5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3' miRNA: 3'- -UUCGGaUACCUaaCCUGG--UUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 17605 | 0.73 | 0.998944 |
Target: 5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3' miRNA: 3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 17828 | 0.67 | 0.999999 |
Target: 5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3' miRNA: 3'- -UUCGGaua---CCUAACCuGGU--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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