miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 154641 1.08 0.001454
Target:  5'- cUCGGCCUCUGACCGGGACGGCUACCAg -3'
miRNA:   3'- -AGCCGGAGACUGGCCCUGCCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 76245 0.78 0.178895
Target:  5'- cUGGCUUCUGACCGGGgu-GCUGCCGg -3'
miRNA:   3'- aGCCGGAGACUGGCCCugcCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 62019 0.76 0.221662
Target:  5'- -aGGCCUucCUGGCCGGGAUGGCgGCa- -3'
miRNA:   3'- agCCGGA--GACUGGCCCUGCCGaUGgu -5'
33399 5' -60.7 NC_007605.1 + 133983 0.76 0.249003
Target:  5'- aCGGCCgcgCUGAacgugcCCGGGGCGGCgggucgggACCGg -3'
miRNA:   3'- aGCCGGa--GACU------GGCCCUGCCGa-------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 54172 0.75 0.254795
Target:  5'- -aGGCCagcCUGGgCGGGGCGGUUGCCu -3'
miRNA:   3'- agCCGGa--GACUgGCCCUGCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 162242 0.74 0.298463
Target:  5'- gCGGCC-CUGcaggGCCGGGuguacggccgGCGGCUGCCu -3'
miRNA:   3'- aGCCGGaGAC----UGGCCC----------UGCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 53761 0.74 0.305155
Target:  5'- aCGGCCUCgcaGAugccCCGGauccacuuGGCGGCUGCCAg -3'
miRNA:   3'- aGCCGGAGa--CU----GGCC--------CUGCCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 135401 0.74 0.325917
Target:  5'- -gGGCC-CUGGcCCGGGugGGCUucCCGg -3'
miRNA:   3'- agCCGGaGACU-GGCCCugCCGAu-GGU- -5'
33399 5' -60.7 NC_007605.1 + 85439 0.73 0.347709
Target:  5'- -aGGCCUCUG-CCGGGgaacggGCGGC-ACCu -3'
miRNA:   3'- agCCGGAGACuGGCCC------UGCCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 16287 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 31632 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 34701 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 19356 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 22425 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 28563 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 13218 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 25494 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 150945 0.73 0.362041
Target:  5'- gCGGCCUC-GGCUGGGAcacgggacgugguCGGCUggcACCAg -3'
miRNA:   3'- aGCCGGAGaCUGGCCCU-------------GCCGA---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 57076 0.72 0.394339
Target:  5'- cCGGCCUCUaACCGGGAagugccgaGGCagaUGCCu -3'
miRNA:   3'- aGCCGGAGAcUGGCCCUg-------CCG---AUGGu -5'
33399 5' -60.7 NC_007605.1 + 103942 0.72 0.410757
Target:  5'- -aGGCCUCUG-CCGGGAgGuGCUgggucGCCu -3'
miRNA:   3'- agCCGGAGACuGGCCCUgC-CGA-----UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.