miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 2722 0.7 0.516425
Target:  5'- -aGGCCUUUcaGACCaGGGCGGCggcugaaUGCCAu -3'
miRNA:   3'- agCCGGAGA--CUGGcCCUGCCG-------AUGGU- -5'
33399 5' -60.7 NC_007605.1 + 4417 0.7 0.489547
Target:  5'- aUGGCC-CUGGCCGGGcaGCGGggagugACCAu -3'
miRNA:   3'- aGCCGGaGACUGGCCC--UGCCga----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 13218 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 14897 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 15183 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 16287 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 17965 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 18252 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 19356 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 21034 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 21321 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 22425 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 24103 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 24390 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 25494 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 27172 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 27459 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 28563 0.73 0.360513
Target:  5'- cCGGCCUCUGgggccgcccgggcuGCCGGGGucccucCGGCUgGCCu -3'
miRNA:   3'- aGCCGGAGAC--------------UGGCCCU------GCCGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 30241 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 30528 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.