miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 119758 0.67 0.691965
Target:  5'- cUCGGCUcagguUCcGGCCcuGGGACGGCagcaGCCGc -3'
miRNA:   3'- -AGCCGG-----AGaCUGG--CCCUGCCGa---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 21034 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 24103 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 27172 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 30241 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 33310 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 135195 0.68 0.623542
Target:  5'- -gGGCCUCUG-CCGGGAagcccaccCGG--GCCAg -3'
miRNA:   3'- agCCGGAGACuGGCCCU--------GCCgaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 151405 0.67 0.67253
Target:  5'- -gGGCCUCguaGGCCGaGACGgGCaGCCGg -3'
miRNA:   3'- agCCGGAGa--CUGGCcCUGC-CGaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 50410 0.67 0.691965
Target:  5'- gUGGCCUUUGGCaCGGGcCuGGC-ACCc -3'
miRNA:   3'- aGCCGGAGACUG-GCCCuG-CCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 17965 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 14897 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 2722 0.7 0.516425
Target:  5'- -aGGCCUUUcaGACCaGGGCGGCggcugaaUGCCAu -3'
miRNA:   3'- agCCGGAGA--CUGGcCCUGCCG-------AUGGU- -5'
33399 5' -60.7 NC_007605.1 + 133983 0.76 0.249003
Target:  5'- aCGGCCgcgCUGAacgugcCCGGGGCGGCgggucgggACCGg -3'
miRNA:   3'- aGCCGGa--GACU------GGCCCUGCCGa-------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 54172 0.75 0.254795
Target:  5'- -aGGCCagcCUGGgCGGGGCGGUUGCCu -3'
miRNA:   3'- agCCGGa--GACUgGCCCUGCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 53761 0.74 0.305155
Target:  5'- aCGGCCUCgcaGAugccCCGGauccacuuGGCGGCUGCCAg -3'
miRNA:   3'- aGCCGGAGa--CU----GGCC--------CUGCCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 103942 0.72 0.410757
Target:  5'- -aGGCCUCUG-CCGGGAgGuGCUgggucGCCu -3'
miRNA:   3'- agCCGGAGACuGGCCCUgC-CGA-----UGGu -5'
33399 5' -60.7 NC_007605.1 + 71258 0.71 0.427593
Target:  5'- cCGGCCccucgagauUCUGACCGGGGaccucUGGUUGCUc -3'
miRNA:   3'- aGCCGG---------AGACUGGCCCU-----GCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 4417 0.7 0.489547
Target:  5'- aUGGCC-CUGGCCGGGcaGCGGggagugACCAu -3'
miRNA:   3'- aGCCGGaGACUGGCCC--UGCCga----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 50354 0.7 0.489547
Target:  5'- aCGGCgg--GGCCGcGGugGGCUGCCc -3'
miRNA:   3'- aGCCGgagaCUGGC-CCugCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 48793 0.7 0.508017
Target:  5'- gCGG-CUCUG-CgGcGGugGGCUGCCAg -3'
miRNA:   3'- aGCCgGAGACuGgC-CCugCCGAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.