miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 3' -58.6 NC_007605.1 + 15739 1.09 0.001717
Target:  5'- cCAGCGUGCCCAAGAGGGCACGGCAAGg -3'
miRNA:   3'- -GUCGCACGGGUUCUCCCGUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 11612 0.79 0.174446
Target:  5'- gGGCG-GCCCAgaGGAGGGCGCGGUc-- -3'
miRNA:   3'- gUCGCaCGGGU--UCUCCCGUGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 159469 0.76 0.269469
Target:  5'- gAGCGcGUCCGAGAGGGCGcCGGaCGGGc -3'
miRNA:   3'- gUCGCaCGGGUUCUCCCGU-GCC-GUUC- -5'
33402 3' -58.6 NC_007605.1 + 32902 0.74 0.385429
Target:  5'- uCAGCcaucgGCCCGgggGGAGGGCACGuGUGAGa -3'
miRNA:   3'- -GUCGca---CGGGU---UCUCCCGUGC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 152623 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 140347 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 149554 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 143416 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 137278 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 155691 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 158760 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 146485 0.72 0.482194
Target:  5'- gAGCGgagaCCAGGAGGGCGCcuggaGGCGGGc -3'
miRNA:   3'- gUCGCacg-GGUUCUCCCGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 67021 0.71 0.510595
Target:  5'- uCAGCG-GCUgcGGAGGGCugGGCu-- -3'
miRNA:   3'- -GUCGCaCGGguUCUCCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 16960 0.71 0.520218
Target:  5'- gCAGCG-GcCCCGAG-GGGCGCaGGCGGc -3'
miRNA:   3'- -GUCGCaC-GGGUUCuCCCGUG-CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 20788 0.71 0.529911
Target:  5'- aAGCGgGCCCAugaaggcccGGGGGC-UGGCGAGg -3'
miRNA:   3'- gUCGCaCGGGUu--------CUCCCGuGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 105347 0.71 0.529911
Target:  5'- aGGCGUuCCCAcGGGGGCGCcccuGGCAGa -3'
miRNA:   3'- gUCGCAcGGGUuCUCCCGUG----CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 161534 0.7 0.579248
Target:  5'- -cGCGUGCCCAGuacguGGGGGUagucACgGGCGGGc -3'
miRNA:   3'- guCGCACGGGUU-----CUCCCG----UG-CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 71121 0.7 0.599282
Target:  5'- uCAGagagGCC--AGGGGGCugGGCAAGg -3'
miRNA:   3'- -GUCgca-CGGguUCUCCCGugCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 105584 0.69 0.609337
Target:  5'- -cGCGUcgagGCCCAGGAGGGCGuCuGcCAGGg -3'
miRNA:   3'- guCGCA----CGGGUUCUCCCGU-GcC-GUUC- -5'
33402 3' -58.6 NC_007605.1 + 47372 0.69 0.609337
Target:  5'- gAGCGUGCUCAAGGGGGUcaguaccuacACGaccgcCAAGg -3'
miRNA:   3'- gUCGCACGGGUUCUCCCG----------UGCc----GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.