miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 3' -58.6 NC_007605.1 + 169320 0.67 0.748318
Target:  5'- aGGCG-G-CUAAGAGGGCuaaggguCGGCGGGu -3'
miRNA:   3'- gUCGCaCgGGUUCUCCCGu------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 162980 0.67 0.738753
Target:  5'- uGGCccaccccaGCCCGAGAagcaGGGUcgGCGGCAGGg -3'
miRNA:   3'- gUCGca------CGGGUUCU----CCCG--UGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 164031 0.67 0.748318
Target:  5'- cCAGUGUGgccaccucCCUAAGAGGGUAggUGGcCAGGg -3'
miRNA:   3'- -GUCGCAC--------GGGUUCUCCCGU--GCC-GUUC- -5'
33402 3' -58.6 NC_007605.1 + 169311 0.67 0.748318
Target:  5'- aGGCGggugagGCggCUAAGAGGGCuaaggguCGGCGGGu -3'
miRNA:   3'- gUCGCa-----CG--GGUUCUCCCGu------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 52308 0.67 0.748318
Target:  5'- -uGUGgaccagGCCCAAGAacucgGGGUGCGGCcAGa -3'
miRNA:   3'- guCGCa-----CGGGUUCU-----CCCGUGCCGuUC- -5'
33402 3' -58.6 NC_007605.1 + 162746 0.67 0.767144
Target:  5'- gAGCGUGUUCAGGcacacggccGGGGCcCGGCc-- -3'
miRNA:   3'- gUCGCACGGGUUC---------UCCCGuGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 60916 0.66 0.794486
Target:  5'- uGGCGUauaugaGCUCGAGAGG--ACGGCGGGc -3'
miRNA:   3'- gUCGCA------CGGGUUCUCCcgUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 60225 0.66 0.810292
Target:  5'- -cGCGaUGCCCcggcucucccuGAGGGC-CGGCAc- -3'
miRNA:   3'- guCGC-ACGGGuu---------CUCCCGuGCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 77607 0.66 0.820549
Target:  5'- uGGUgGUGCCUggGcGGGGUGCuGGCGAa -3'
miRNA:   3'- gUCG-CACGGGuuC-UCCCGUG-CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 127944 0.67 0.729097
Target:  5'- aCAG-GUGCCCAAGcuGGGCAaugcccccgcCGcGCAGGu -3'
miRNA:   3'- -GUCgCACGGGUUCu-CCCGU----------GC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 67885 0.68 0.699676
Target:  5'- aAGCG-GCCaCAAGGGGGUuccCGGCcuGa -3'
miRNA:   3'- gUCGCaCGG-GUUCUCCCGu--GCCGuuC- -5'
33402 3' -58.6 NC_007605.1 + 171304 0.68 0.689748
Target:  5'- gGGUGUGUCUGGuGGGGGCGgGaGCGGGg -3'
miRNA:   3'- gUCGCACGGGUU-CUCCCGUgC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 105347 0.71 0.529911
Target:  5'- aGGCGUuCCCAcGGGGGCGCcccuGGCAGa -3'
miRNA:   3'- gUCGCAcGGGUuCUCCCGUG----CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 161534 0.7 0.579248
Target:  5'- -cGCGUGCCCAGuacguGGGGGUagucACgGGCGGGc -3'
miRNA:   3'- guCGCACGGGUU-----CUCCCG----UG-CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 71121 0.7 0.599282
Target:  5'- uCAGagagGCC--AGGGGGCugGGCAAGg -3'
miRNA:   3'- -GUCgca-CGGguUCUCCCGugCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 105584 0.69 0.609337
Target:  5'- -cGCGUcgagGCCCAGGAGGGCGuCuGcCAGGg -3'
miRNA:   3'- guCGCA----CGGGUUCUCCCGU-GcC-GUUC- -5'
33402 3' -58.6 NC_007605.1 + 44944 0.68 0.689748
Target:  5'- gCAGCcagGCCCuuAGccuGGGGCAUGGCAc- -3'
miRNA:   3'- -GUCGca-CGGGu-UC---UCCCGUGCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 169706 0.68 0.689748
Target:  5'- gGGUGUGUCUGGuGGGGGCGgGaGCGGGg -3'
miRNA:   3'- gUCGCACGGGUU-CUCCCGUgC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 170244 0.68 0.689748
Target:  5'- gGGUGUGUCUGGuGGGGGCGgGaGCGGGg -3'
miRNA:   3'- gUCGCACGGGUU-CUCCCGUgC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 170766 0.68 0.689748
Target:  5'- gGGUGUGUCUGGuGGGGGCGgGaGCGGGg -3'
miRNA:   3'- gUCGCACGGGUU-CUCCCGUgC-CGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.