miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 3' -58.6 NC_007605.1 + 8811 0.66 0.812017
Target:  5'- ---gGUGCCgGAGAcGGGCAgcuacgUGGCGGGg -3'
miRNA:   3'- gucgCACGGgUUCU-CCCGU------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 11612 0.79 0.174446
Target:  5'- gGGCG-GCCCAgaGGAGGGCGCGGUc-- -3'
miRNA:   3'- gUCGCaCGGGU--UCUCCCGUGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 15739 1.09 0.001717
Target:  5'- cCAGCGUGCCCAAGAGGGCACGGCAAGg -3'
miRNA:   3'- -GUCGCACGGGUUCUCCCGUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 16960 0.71 0.520218
Target:  5'- gCAGCG-GcCCCGAG-GGGCGCaGGCGGc -3'
miRNA:   3'- -GUCGCaC-GGGUUCuCCCGUG-CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 20538 0.67 0.738753
Target:  5'- -uGCGgccGCCCAGGGGGGCAaauuGCGu- -3'
miRNA:   3'- guCGCa--CGGGUUCUCCCGUgc--CGUuc -5'
33402 3' -58.6 NC_007605.1 + 20788 0.71 0.529911
Target:  5'- aAGCGgGCCCAugaaggcccGGGGGC-UGGCGAGg -3'
miRNA:   3'- gUCGCaCGGGUu--------CUCCCGuGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 20971 0.69 0.61941
Target:  5'- aGGUGgacaggGCCgAGGAGGGCugGGUc-- -3'
miRNA:   3'- gUCGCa-----CGGgUUCUCCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 22898 0.68 0.679773
Target:  5'- cCAGgGagGCCUggGAGGGgGCGaGCAGu -3'
miRNA:   3'- -GUCgCa-CGGGuuCUCCCgUGC-CGUUc -5'
33402 3' -58.6 NC_007605.1 + 32902 0.74 0.385429
Target:  5'- uCAGCcaucgGCCCGgggGGAGGGCACGuGUGAGa -3'
miRNA:   3'- -GUCGca---CGGGU---UCUCCCGUGC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 36423 0.69 0.659717
Target:  5'- gGGCccugGCCCGGGuGGGCuuccCGGCAGa -3'
miRNA:   3'- gUCGca--CGGGUUCuCCCGu---GCCGUUc -5'
33402 3' -58.6 NC_007605.1 + 43931 0.66 0.803327
Target:  5'- gCGGgGUGCUCugaugcggaaAAGGGGGCGaucugauucaGGCAGGa -3'
miRNA:   3'- -GUCgCACGGG----------UUCUCCCGUg---------CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 44944 0.68 0.689748
Target:  5'- gCAGCcagGCCCuuAGccuGGGGCAUGGCAc- -3'
miRNA:   3'- -GUCGca-CGGGu-UC---UCCCGUGCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 47372 0.69 0.609337
Target:  5'- gAGCGUGCUCAAGGGGGUcaguaccuacACGaccgcCAAGg -3'
miRNA:   3'- gUCGCACGGGUUCUCCCG----------UGCc----GUUC- -5'
33402 3' -58.6 NC_007605.1 + 52308 0.67 0.748318
Target:  5'- -uGUGgaccagGCCCAAGAacucgGGGUGCGGCcAGa -3'
miRNA:   3'- guCGCa-----CGGGUUCU-----CCCGUGCCGuUC- -5'
33402 3' -58.6 NC_007605.1 + 55433 0.67 0.776386
Target:  5'- uCAGCGagGCCCucuuugaucagGAGGGGGCGCugaGGCc-- -3'
miRNA:   3'- -GUCGCa-CGGG-----------UUCUCCCGUG---CCGuuc -5'
33402 3' -58.6 NC_007605.1 + 55785 0.67 0.776386
Target:  5'- -cGCGUGCCaaacugCGAGGGGGCcUGGUg-- -3'
miRNA:   3'- guCGCACGG------GUUCUCCCGuGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 60225 0.66 0.810292
Target:  5'- -cGCGaUGCCCcggcucucccuGAGGGC-CGGCAc- -3'
miRNA:   3'- guCGC-ACGGGuu---------CUCCCGuGCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 60916 0.66 0.794486
Target:  5'- uGGCGUauaugaGCUCGAGAGG--ACGGCGGGc -3'
miRNA:   3'- gUCGCA------CGGGUUCUCCcgUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 61237 0.66 0.803327
Target:  5'- gAGCaaGUGCUacaucuugAGGGGGGCugGGCAc- -3'
miRNA:   3'- gUCG--CACGGg-------UUCUCCCGugCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 61283 0.66 0.794486
Target:  5'- uCGGCGUgugGCCCcguGGGGGCgcagACGGCc-- -3'
miRNA:   3'- -GUCGCA---CGGGuu-CUCCCG----UGCCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.