miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 5' -56.5 NC_007605.1 + 15777 1.12 0.001813
Target:  5'- aCACCCACGGAAGCCCUCUGGACUUCCa -3'
miRNA:   3'- -GUGGGUGCCUUCGGGAGACCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 124558 0.76 0.402061
Target:  5'- gACCCGC-GAGGCCUUCUGGGCguuggcggCCu -3'
miRNA:   3'- gUGGGUGcCUUCGGGAGACCUGaa------GG- -5'
33402 5' -56.5 NC_007605.1 + 68604 0.76 0.41914
Target:  5'- gACCCAgGGAGGCCUgcagCUGaGACU-CCa -3'
miRNA:   3'- gUGGGUgCCUUCGGGa---GAC-CUGAaGG- -5'
33402 5' -56.5 NC_007605.1 + 63068 0.74 0.482194
Target:  5'- cCGCgCCAUGGguGCCCUCUGGuCUcuuugCCg -3'
miRNA:   3'- -GUG-GGUGCCuuCGGGAGACCuGAa----GG- -5'
33402 5' -56.5 NC_007605.1 + 10688 0.73 0.529911
Target:  5'- --aCgGCGGAGGCCgCUCgGGACUUUCu -3'
miRNA:   3'- gugGgUGCCUUCGG-GAGaCCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 71337 0.73 0.539669
Target:  5'- gCACCC-UGGggGCCCUUgGGGCU-CUg -3'
miRNA:   3'- -GUGGGuGCCuuCGGGAGaCCUGAaGG- -5'
33402 5' -56.5 NC_007605.1 + 53620 0.73 0.559361
Target:  5'- cCAUCCAUGGAGuucugggccauGCCCUC--GACUUCCa -3'
miRNA:   3'- -GUGGGUGCCUU-----------CGGGAGacCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 24477 0.73 0.559361
Target:  5'- gGCCC-CGGGAcacUCCUCUGGGgUUCCa -3'
miRNA:   3'- gUGGGuGCCUUc--GGGAGACCUgAAGG- -5'
33402 5' -56.5 NC_007605.1 + 3666 0.7 0.699677
Target:  5'- aGCCCGgGGuAGGUCCcCUGGACcugCCg -3'
miRNA:   3'- gUGGGUgCC-UUCGGGaGACCUGaa-GG- -5'
33402 5' -56.5 NC_007605.1 + 76000 0.7 0.729097
Target:  5'- aCugCCGCcGGAGCCUUCUGG---UCCa -3'
miRNA:   3'- -GugGGUGcCUUCGGGAGACCugaAGG- -5'
33402 5' -56.5 NC_007605.1 + 51090 0.69 0.757785
Target:  5'- gGCCUugGGGAGCUUcccggagaccggUCUGGGCUcUCg -3'
miRNA:   3'- gUGGGugCCUUCGGG------------AGACCUGAaGG- -5'
33402 5' -56.5 NC_007605.1 + 136347 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 157829 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 139416 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 148623 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 145554 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 142485 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 154760 0.69 0.757785
Target:  5'- uCACCCuCGGGGaCCC-CUGGACaUCUg -3'
miRNA:   3'- -GUGGGuGCCUUcGGGaGACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 106129 0.69 0.776386
Target:  5'- gGCCCAUGGAGGCCauauccCUGGAa-UCa -3'
miRNA:   3'- gUGGGUGCCUUCGGga----GACCUgaAGg -5'
33402 5' -56.5 NC_007605.1 + 150817 0.69 0.776386
Target:  5'- gGCCCGCGGAcgccgccucgccAGCCCcCgGGcCUUCa -3'
miRNA:   3'- gUGGGUGCCU------------UCGGGaGaCCuGAAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.