miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 5' -56.5 NC_007605.1 + 25417 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 163539 0.68 0.828915
Target:  5'- aACUgGCGGAGcuggggcacGCCCUCUGGGaacaccUCCu -3'
miRNA:   3'- gUGGgUGCCUU---------CGGGAGACCUga----AGG- -5'
33402 5' -56.5 NC_007605.1 + 86087 0.68 0.837107
Target:  5'- gACCCugGGccGGGgCCUCcauccagugGGGCUUCUg -3'
miRNA:   3'- gUGGGugCC--UUCgGGAGa--------CCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 138683 0.68 0.837107
Target:  5'- --aCCGCGGAguuuGGCCCUCcgcGGugU-CCg -3'
miRNA:   3'- gugGGUGCCU----UCGGGAGa--CCugAaGG- -5'
33402 5' -56.5 NC_007605.1 + 155846 0.67 0.852941
Target:  5'- ---aCAUGGAAGUCCagaGGGCUUCCg -3'
miRNA:   3'- guggGUGCCUUCGGGagaCCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 13141 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 16210 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 19279 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 22348 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 35074 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 32005 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 25868 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 53620 0.73 0.559361
Target:  5'- cCAUCCAUGGAGuucugggccauGCCCUC--GACUUCCa -3'
miRNA:   3'- -GUGGGUGCCUU-----------CGGGAGacCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 3666 0.7 0.699677
Target:  5'- aGCCCGgGGuAGGUCCcCUGGACcugCCg -3'
miRNA:   3'- gUGGGUgCC-UUCGGGaGACCUGaa-GG- -5'
33402 5' -56.5 NC_007605.1 + 51090 0.69 0.757785
Target:  5'- gGCCUugGGGAGCUUcccggagaccggUCUGGGCUcUCg -3'
miRNA:   3'- gUGGGugCCUUCGGG------------AGACCUGAaGG- -5'
33402 5' -56.5 NC_007605.1 + 150817 0.69 0.776386
Target:  5'- gGCCCGCGGAcgccgccucgccAGCCCcCgGGcCUUCa -3'
miRNA:   3'- gUGGGUGCCU------------UCGGGaGaCCuGAAGg -5'
33402 5' -56.5 NC_007605.1 + 13592 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 16661 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 19730 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 22799 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.