miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 5' -56.5 NC_007605.1 + 1122 0.66 0.895608
Target:  5'- -cCCCACGGggGUCUUucCUGGGgggCCu -3'
miRNA:   3'- guGGGUGCCuuCGGGA--GACCUgaaGG- -5'
33402 5' -56.5 NC_007605.1 + 3666 0.7 0.699677
Target:  5'- aGCCCGgGGuAGGUCCcCUGGACcugCCg -3'
miRNA:   3'- gUGGGUgCC-UUCGGGaGACCUGaa-GG- -5'
33402 5' -56.5 NC_007605.1 + 9878 0.67 0.891688
Target:  5'- gGCCagCGCGGAggaguacucugaccuGGCCCUCUuuguggacggGGGCUcCCg -3'
miRNA:   3'- gUGG--GUGCCU---------------UCGGGAGA----------CCUGAaGG- -5'
33402 5' -56.5 NC_007605.1 + 10688 0.73 0.529911
Target:  5'- --aCgGCGGAGGCCgCUCgGGACUUUCu -3'
miRNA:   3'- gugGgUGCCUUCGG-GAGaCCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 10970 0.66 0.919657
Target:  5'- gCACCCgGCGGAccCCCggagUCUGGACguggCUg -3'
miRNA:   3'- -GUGGG-UGCCUucGGG----AGACCUGaa--GG- -5'
33402 5' -56.5 NC_007605.1 + 12155 0.66 0.919657
Target:  5'- gGCCCGucCGGc-GCCCUCUcGGACgcgCUc -3'
miRNA:   3'- gUGGGU--GCCuuCGGGAGA-CCUGaa-GG- -5'
33402 5' -56.5 NC_007605.1 + 13141 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 13592 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 14196 0.69 0.803327
Target:  5'- gGCCCGCGGGAGCaCCcccgccgccguUCUGaGGCgUCg -3'
miRNA:   3'- gUGGGUGCCUUCG-GG-----------AGAC-CUGaAGg -5'
33402 5' -56.5 NC_007605.1 + 14277 0.67 0.86057
Target:  5'- gGCCCcCgGGAAGUCC-CUGGGCacCCu -3'
miRNA:   3'- gUGGGuG-CCUUCGGGaGACCUGaaGG- -5'
33402 5' -56.5 NC_007605.1 + 15777 1.12 0.001813
Target:  5'- aCACCCACGGAAGCCCUCUGGACUUCCa -3'
miRNA:   3'- -GUGGGUGCCUUCGGGAGACCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 16210 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 16661 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 18566 0.67 0.889031
Target:  5'- gACCCAaagugaGGggGCCUgagaCUGGAC--CCu -3'
miRNA:   3'- gUGGGUg-----CCuuCGGGa---GACCUGaaGG- -5'
33402 5' -56.5 NC_007605.1 + 19279 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 19730 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 20793 0.68 0.845118
Target:  5'- gGCCCAUGaAGGCCCgg-GGGCUggcgaggcggcgUCCg -3'
miRNA:   3'- gUGGGUGCcUUCGGGagaCCUGA------------AGG- -5'
33402 5' -56.5 NC_007605.1 + 22348 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 22799 0.68 0.812017
Target:  5'- -cCCCACGGuggacAGGCCCUCUguccacccGGGCcaUCCc -3'
miRNA:   3'- guGGGUGCC-----UUCGGGAGA--------CCUGa-AGG- -5'
33402 5' -56.5 NC_007605.1 + 24477 0.73 0.559361
Target:  5'- gGCCC-CGGGAcacUCCUCUGGGgUUCCa -3'
miRNA:   3'- gUGGGuGCCUUc--GGGAGACCUgAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.