miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33415 3' -56 NC_007605.1 + 62173 0.66 0.935364
Target:  5'- gGCCUUGAUguccGCGGC-CGUGGgcugaCCCUGc -3'
miRNA:   3'- -CGGAGUUGa---UGCUGaGCACCg----GGGAC- -5'
33415 3' -56 NC_007605.1 + 103023 0.66 0.930373
Target:  5'- aGUCUCAGCUGCaGGcCUCccugGGUCCCg- -3'
miRNA:   3'- -CGGAGUUGAUG-CU-GAGca--CCGGGGac -5'
33415 3' -56 NC_007605.1 + 77592 0.66 0.930373
Target:  5'- gGCCUgAcGCUugG-CUgGUGGUgCCUGg -3'
miRNA:   3'- -CGGAgU-UGAugCuGAgCACCGgGGAC- -5'
33415 3' -56 NC_007605.1 + 169297 0.66 0.919691
Target:  5'- gGCCUCGugUcaGCGGuCUC-UGGCCCg-- -3'
miRNA:   3'- -CGGAGUugA--UGCU-GAGcACCGGGgac -5'
33415 3' -56 NC_007605.1 + 126432 0.66 0.913999
Target:  5'- gGCCaUCAccagaccggagGCUgGCGACcauUCGcagGGCCCCUGc -3'
miRNA:   3'- -CGG-AGU-----------UGA-UGCUG---AGCa--CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 35447 0.67 0.88893
Target:  5'- gGCCUUuaaaUACGACUCGgcugGGauauuggccacaCCCCUGu -3'
miRNA:   3'- -CGGAGuug-AUGCUGAGCa---CC------------GGGGAC- -5'
33415 3' -56 NC_007605.1 + 137821 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 153166 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 147028 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 140890 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 150097 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 69089 0.67 0.882101
Target:  5'- uGCCUCucUUAUGcCU-GUGGCCCCg- -3'
miRNA:   3'- -CGGAGuuGAUGCuGAgCACCGGGGac -5'
33415 3' -56 NC_007605.1 + 156235 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 159304 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 143959 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 47672 0.68 0.860329
Target:  5'- gGCCccCAGCUucugagGCGGCU-GUGGCCUCUa -3'
miRNA:   3'- -CGGa-GUUGA------UGCUGAgCACCGGGGAc -5'
33415 3' -56 NC_007605.1 + 20881 0.68 0.859571
Target:  5'- gGCCUCGGCUGgGACacgggaCGUGGUCggcuggcaccaggCCUGg -3'
miRNA:   3'- -CGGAGUUGAUgCUGa-----GCACCGG-------------GGAC- -5'
33415 3' -56 NC_007605.1 + 56970 0.68 0.850322
Target:  5'- gGCCUCGGCcugggguaaggugauCGACUCcaGGCCCCc- -3'
miRNA:   3'- -CGGAGUUGau-------------GCUGAGcaCCGGGGac -5'
33415 3' -56 NC_007605.1 + 53476 0.69 0.793898
Target:  5'- cCCUgCAGCUGgGACUCuuccugGGCCuCCUGg -3'
miRNA:   3'- cGGA-GUUGAUgCUGAGca----CCGG-GGAC- -5'
33415 3' -56 NC_007605.1 + 1875 0.7 0.766411
Target:  5'- cGCgCUCGGCcuaGACcCGgGGCCCCUGa -3'
miRNA:   3'- -CG-GAGUUGaugCUGaGCaCCGGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.