miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 3' -52.7 NC_007605.1 + 1902 1.11 0.003625
Target:  5'- gAUUGCUGAGAACCUGCUGCUAGUGGCg -3'
miRNA:   3'- -UAACGACUCUUGGACGACGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 33376 0.78 0.426702
Target:  5'- uGUUGCUGAGGagcuucuuagGCCUGCUGCcacucGUGGUu -3'
miRNA:   3'- -UAACGACUCU----------UGGACGACGau---CACCG- -5'
33424 3' -52.7 NC_007605.1 + 134564 0.78 0.445382
Target:  5'- --gGCUGugcuGGugCUGCUGgUGGUGGCa -3'
miRNA:   3'- uaaCGACu---CUugGACGACgAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 78041 0.74 0.625989
Target:  5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3'
miRNA:   3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 77978 0.74 0.625989
Target:  5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3'
miRNA:   3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 78104 0.74 0.657882
Target:  5'- -cUGCUGAGGuaggACUUGUUuuucccaaggugggGCUGGUGGCa -3'
miRNA:   3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 139081 0.72 0.754284
Target:  5'- uUUGgUG-GGACCugaUGCUGCUGGUGuGCu -3'
miRNA:   3'- uAACgACuCUUGG---ACGACGAUCAC-CG- -5'
33424 3' -52.7 NC_007605.1 + 2368 0.71 0.799696
Target:  5'- --aGCUGAauGAguggguguuuggugGCaggGCUGCUGGUGGCa -3'
miRNA:   3'- uaaCGACU--CU--------------UGga-CGACGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 72416 0.71 0.802483
Target:  5'- gAUUGCUGAa---CUGggGCUGGUGGCc -3'
miRNA:   3'- -UAACGACUcuugGACgaCGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 11847 0.71 0.811662
Target:  5'- -gUGCgGGGGGCCUGCgaggaggcGCUGGcgggGGCa -3'
miRNA:   3'- uaACGaCUCUUGGACGa-------CGAUCa---CCG- -5'
33424 3' -52.7 NC_007605.1 + 9088 0.7 0.870505
Target:  5'- --aGCUGAaccaGAACCUGCUGg-AGcGGCu -3'
miRNA:   3'- uaaCGACU----CUUGGACGACgaUCaCCG- -5'
33424 3' -52.7 NC_007605.1 + 78209 0.69 0.878043
Target:  5'- -cUGCUGGGG---UGggGCUGGUGGCa -3'
miRNA:   3'- uaACGACUCUuggACgaCGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 78167 0.69 0.878043
Target:  5'- -cUGCUGGGG---UGggGCUGGUGGCa -3'
miRNA:   3'- uaACGACUCUuggACgaCGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 122165 0.69 0.878043
Target:  5'- -aUGCggcgGccuGAGCCUGCUGgacgggGGUGGCg -3'
miRNA:   3'- uaACGa---Cu--CUUGGACGACga----UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 4658 0.69 0.878043
Target:  5'- --cGCUGc--GCCUGCUGCUGGgaaccUGGUc -3'
miRNA:   3'- uaaCGACucuUGGACGACGAUC-----ACCG- -5'
33424 3' -52.7 NC_007605.1 + 125989 0.69 0.885344
Target:  5'- aGUUGCUGcGucCCUGCUGCcGGaGGUg -3'
miRNA:   3'- -UAACGACuCuuGGACGACGaUCaCCG- -5'
33424 3' -52.7 NC_007605.1 + 116295 0.69 0.885344
Target:  5'- --cGCUG-GAGCCaGCgcgcCUAGUGGCc -3'
miRNA:   3'- uaaCGACuCUUGGaCGac--GAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 94475 0.68 0.912087
Target:  5'- -gUGCUGAcccuucugCUGCUGCUGGUcauGGCg -3'
miRNA:   3'- uaACGACUcuug----GACGACGAUCA---CCG- -5'
33424 3' -52.7 NC_007605.1 + 1110 0.68 0.91814
Target:  5'- cUUGUUGcuAGCCUccgcGCUaaucGCUGGUGGCa -3'
miRNA:   3'- uAACGACucUUGGA----CGA----CGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 92419 0.68 0.934753
Target:  5'- gGUUGCUGGGGGCCUGgaugaagaauCUGUcAGUGa- -3'
miRNA:   3'- -UAACGACUCUUGGAC----------GACGaUCACcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.