Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 15551 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 153400 | 0.67 | 0.94454 |
Target: 5'- --gGCUGAGAGCUUGCgGCUGa--GCu -3' miRNA: 3'- uaaCGACUCUUGGACGaCGAUcacCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 63381 | 0.67 | 0.949052 |
Target: 5'- --gGCUGAccuggucccGGACUuuggGCgGCUGGUGGCc -3' miRNA: 3'- uaaCGACU---------CUUGGa---CGaCGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 55000 | 0.67 | 0.958865 |
Target: 5'- uUUGUUGGGGgcaguguccagaaagGCCUcgaGCUGUUccucGGUGGCg -3' miRNA: 3'- uAACGACUCU---------------UGGA---CGACGA----UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 49399 | 0.66 | 0.9611 |
Target: 5'- --gGCaGAGAGCCaGUgugGCUGG-GGCu -3' miRNA: 3'- uaaCGaCUCUUGGaCGa--CGAUCaCCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 105112 | 0.66 | 0.967937 |
Target: 5'- --cGCUucucACCUG-UGCUAGUGGCu -3' miRNA: 3'- uaaCGAcucuUGGACgACGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 63038 | 0.66 | 0.969195 |
Target: 5'- --cGCUGAGugcggcGGCCgucuggcgcgcaggGCUGCUggccccgggggaGGUGGCg -3' miRNA: 3'- uaaCGACUC------UUGGa-------------CGACGA------------UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 104520 | 0.66 | 0.971016 |
Target: 5'- --gGCUGAG-ACCa--UGCUcAGUGGCc -3' miRNA: 3'- uaaCGACUCuUGGacgACGA-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 12482 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 92419 | 0.68 | 0.934753 |
Target: 5'- gGUUGCUGGGGGCCUGgaugaagaauCUGUcAGUGa- -3' miRNA: 3'- -UAACGACUCUUGGAC----------GACGaUCACcg -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 1110 | 0.68 | 0.91814 |
Target: 5'- cUUGUUGcuAGCCUccgcGCUaaucGCUGGUGGCa -3' miRNA: 3'- uAACGACucUUGGA----CGA----CGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 125989 | 0.69 | 0.885344 |
Target: 5'- aGUUGCUGcGucCCUGCUGCcGGaGGUg -3' miRNA: 3'- -UAACGACuCuuGGACGACGaUCaCCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 77978 | 0.74 | 0.625989 |
Target: 5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 78041 | 0.74 | 0.625989 |
Target: 5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 78104 | 0.74 | 0.657882 |
Target: 5'- -cUGCUGAGGuaggACUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 139081 | 0.72 | 0.754284 |
Target: 5'- uUUGgUG-GGACCugaUGCUGCUGGUGuGCu -3' miRNA: 3'- uAACgACuCUUGG---ACGACGAUCAC-CG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 2368 | 0.71 | 0.799696 |
Target: 5'- --aGCUGAauGAguggguguuuggugGCaggGCUGCUGGUGGCa -3' miRNA: 3'- uaaCGACU--CU--------------UGga-CGACGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 4658 | 0.69 | 0.878043 |
Target: 5'- --cGCUGc--GCCUGCUGCUGGgaaccUGGUc -3' miRNA: 3'- uaaCGACucuUGGACGACGAUC-----ACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 78167 | 0.69 | 0.878043 |
Target: 5'- -cUGCUGGGG---UGggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCUuggACgaCGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 78209 | 0.69 | 0.878043 |
Target: 5'- -cUGCUGGGG---UGggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCUuggACgaCGAUCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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