miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 3' -52.7 NC_007605.1 + 1110 0.68 0.91814
Target:  5'- cUUGUUGcuAGCCUccgcGCUaaucGCUGGUGGCa -3'
miRNA:   3'- uAACGACucUUGGA----CGA----CGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 1902 1.11 0.003625
Target:  5'- gAUUGCUGAGAACCUGCUGCUAGUGGCg -3'
miRNA:   3'- -UAACGACUCUUGGACGACGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 2368 0.71 0.799696
Target:  5'- --aGCUGAauGAguggguguuuggugGCaggGCUGCUGGUGGCa -3'
miRNA:   3'- uaaCGACU--CU--------------UGga-CGACGAUCACCG- -5'
33424 3' -52.7 NC_007605.1 + 4658 0.69 0.878043
Target:  5'- --cGCUGc--GCCUGCUGCUGGgaaccUGGUc -3'
miRNA:   3'- uaaCGACucuUGGACGACGAUC-----ACCG- -5'
33424 3' -52.7 NC_007605.1 + 8209 0.67 0.956937
Target:  5'- -cUGCUGgagaagcAGAGCCUGCaggaccagGCcaaGGUGGCc -3'
miRNA:   3'- uaACGAC-------UCUUGGACGa-------CGa--UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 9088 0.7 0.870505
Target:  5'- --aGCUGAaccaGAACCUGCUGg-AGcGGCu -3'
miRNA:   3'- uaaCGACU----CUUGGACGACgaUCaCCG- -5'
33424 3' -52.7 NC_007605.1 + 11326 0.67 0.958865
Target:  5'- --gGCUgGAGAGCCUGgaacgggcccuggauCUGCUGGgccgcuuucggGGCg -3'
miRNA:   3'- uaaCGA-CUCUUGGAC---------------GACGAUCa----------CCG- -5'
33424 3' -52.7 NC_007605.1 + 11847 0.71 0.811662
Target:  5'- -gUGCgGGGGGCCUGCgaggaggcGCUGGcgggGGCa -3'
miRNA:   3'- uaACGaCUCUUGGACGa-------CGAUCa---CCG- -5'
33424 3' -52.7 NC_007605.1 + 12482 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 15551 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 18620 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 21689 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 24758 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 27827 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 30896 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 33376 0.78 0.426702
Target:  5'- uGUUGCUGAGGagcuucuuagGCCUGCUGCcacucGUGGUu -3'
miRNA:   3'- -UAACGACUCU----------UGGACGACGau---CACCG- -5'
33424 3' -52.7 NC_007605.1 + 33964 0.66 0.976525
Target:  5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3'
miRNA:   3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5'
33424 3' -52.7 NC_007605.1 + 46686 0.68 0.936792
Target:  5'- --gGCUGAGGGgUUGUuucauagcuuugaccUGCUGGUGGg -3'
miRNA:   3'- uaaCGACUCUUgGACG---------------ACGAUCACCg -5'
33424 3' -52.7 NC_007605.1 + 49399 0.66 0.9611
Target:  5'- --gGCaGAGAGCCaGUgugGCUGG-GGCu -3'
miRNA:   3'- uaaCGaCUCUUGGaCGa--CGAUCaCCG- -5'
33424 3' -52.7 NC_007605.1 + 55000 0.67 0.958865
Target:  5'- uUUGUUGGGGgcaguguccagaaagGCCUcgaGCUGUUccucGGUGGCg -3'
miRNA:   3'- uAACGACUCU---------------UGGA---CGACGA----UCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.