miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 3' -62.1 NC_007605.1 + 160653 1.08 0.001171
Target:  5'- cACGUCCAGACUCCGGGGGUCCAGCCGg -3'
miRNA:   3'- -UGCAGGUCUGAGGCCCCCAGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 131199 0.79 0.122492
Target:  5'- uCGUCCAGacGCUCgGGGGGUgcacaccucCCAGCCGg -3'
miRNA:   3'- uGCAGGUC--UGAGgCCCCCA---------GGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 28384 0.79 0.122492
Target:  5'- uCGUCCAGacGCUCgGGGGGUgcacaccucCCAGCCGg -3'
miRNA:   3'- uGCAGGUC--UGAGgCCCCCA---------GGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 126161 0.72 0.362713
Target:  5'- cCGUuuGGACacccCCGGGGGcCCGGCCc -3'
miRNA:   3'- uGCAggUCUGa---GGCCCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 155550 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 158619 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 146343 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 149412 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 137136 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 152481 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 143274 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 140205 0.72 0.370329
Target:  5'- cCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 169584 0.71 0.385886
Target:  5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3'
miRNA:   3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5'
33615 3' -62.1 NC_007605.1 + 170121 0.71 0.385886
Target:  5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3'
miRNA:   3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5'
33615 3' -62.1 NC_007605.1 + 171181 0.71 0.385886
Target:  5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3'
miRNA:   3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5'
33615 3' -62.1 NC_007605.1 + 169889 0.71 0.385886
Target:  5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3'
miRNA:   3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 170427 0.71 0.385886
Target:  5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3'
miRNA:   3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 136842 0.71 0.385886
Target:  5'- uCGcCCGGGCUgCCGGGGucccUCCGGCUGg -3'
miRNA:   3'- uGCaGGUCUGA-GGCCCCc---AGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 170949 0.71 0.385886
Target:  5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3'
miRNA:   3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 171487 0.71 0.385886
Target:  5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3'
miRNA:   3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.