Results 1 - 20 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 22762 | 0.7 | 0.469786 |
Target: 5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3' miRNA: 3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 22999 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 26068 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 29137 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 32206 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 35275 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 13555 | 0.7 | 0.469786 |
Target: 5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3' miRNA: 3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 16624 | 0.7 | 0.469786 |
Target: 5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3' miRNA: 3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 19693 | 0.7 | 0.469786 |
Target: 5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3' miRNA: 3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 16862 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 13793 | 0.7 | 0.452242 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 19931 | 0.7 | 0.443605 |
Target: 5'- uUGUCCAGAUgUCCaGGGGUCCccgaggguaGGCCc -3' miRNA: 3'- uGCAGGUCUG-AGGcCCCCAGG---------UCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 126161 | 0.72 | 0.362713 |
Target: 5'- cCGUuuGGACacccCCGGGGGcCCGGCCc -3' miRNA: 3'- uGCAggUCUGa---GGCCCCCaGGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 169584 | 0.71 | 0.385886 |
Target: 5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3' miRNA: 3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 170121 | 0.71 | 0.385886 |
Target: 5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3' miRNA: 3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 171181 | 0.71 | 0.385886 |
Target: 5'- -gGUCCgcGGGCUCCGGGGGcUgCGGgCGg -3' miRNA: 3'- ugCAGG--UCUGAGGCCCCC-AgGUCgGC- -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 169889 | 0.71 | 0.385886 |
Target: 5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3' miRNA: 3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 170427 | 0.71 | 0.385886 |
Target: 5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3' miRNA: 3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 170949 | 0.71 | 0.385886 |
Target: 5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3' miRNA: 3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5' |
|||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 171487 | 0.71 | 0.385886 |
Target: 5'- aACGUgaCCcgGGGCUCCGGGGugacCCAGCCa -3' miRNA: 3'- -UGCA--GG--UCUGAGGCCCCca--GGUCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home