miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 3' -62.1 NC_007605.1 + 10690 0.67 0.639139
Target:  5'- aGCGUCCGGGagCCGGGcGGcUCGGCUa -3'
miRNA:   3'- -UGCAGGUCUgaGGCCC-CCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 12722 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 13555 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 13793 0.7 0.452242
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5'
33615 3' -62.1 NC_007605.1 + 15791 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 16624 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 16862 0.7 0.452242
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5'
33615 3' -62.1 NC_007605.1 + 18860 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 19693 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 19931 0.7 0.443605
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgaggguaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG---------UCGGc -5'
33615 3' -62.1 NC_007605.1 + 21929 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 22762 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 22999 0.7 0.452242
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5'
33615 3' -62.1 NC_007605.1 + 24997 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 25831 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 26068 0.7 0.452242
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5'
33615 3' -62.1 NC_007605.1 + 28066 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 28384 0.79 0.122492
Target:  5'- uCGUCCAGacGCUCgGGGGGUgcacaccucCCAGCCGg -3'
miRNA:   3'- uGCAGGUC--UGAGgCCCCCA---------GGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 28900 0.7 0.469786
Target:  5'- cCGUCCAcGGCUCCc-GGGcCCAGCCu -3'
miRNA:   3'- uGCAGGU-CUGAGGccCCCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 29137 0.7 0.452242
Target:  5'- uUGUCCAGAUgUCCaGGGGUCCccgagggugaGGCCc -3'
miRNA:   3'- uGCAGGUCUG-AGGcCCCCAGG----------UCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.