miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 5' -56.8 NC_007605.1 + 15843 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 12774 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 38919 0.66 0.893253
Target:  5'- -gCAGCgggCGGCCGCCGGuGG-GUcCGCu -3'
miRNA:   3'- gaGUCGa--GUUGGCGGUC-CCgCAuGUG- -5'
33615 5' -56.8 NC_007605.1 + 21980 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 25049 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 28118 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 31187 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 34256 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 62431 0.66 0.893253
Target:  5'- -cCGGUacgCGGCCGCCAGGGCc----- -3'
miRNA:   3'- gaGUCGa--GUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 18912 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 158636 0.66 0.886528
Target:  5'- gUCuGCgcaccgagaCGGCaCGCCAGGGCGgcuagcaGCACg -3'
miRNA:   3'- gAGuCGa--------GUUG-GCGGUCCCGCa------UGUG- -5'
33615 5' -56.8 NC_007605.1 + 109178 0.66 0.879582
Target:  5'- uCUCGGCUCAucgcagagACCcggGCCcuGGCGgcCGCg -3'
miRNA:   3'- -GAGUCGAGU--------UGG---CGGucCCGCauGUG- -5'
33615 5' -56.8 NC_007605.1 + 39831 0.66 0.879582
Target:  5'- -cCAGCcCcGCCGaucccucccCCAGGGCGUACcCg -3'
miRNA:   3'- gaGUCGaGuUGGC---------GGUCCCGCAUGuG- -5'
33615 5' -56.8 NC_007605.1 + 131193 0.66 0.872417
Target:  5'- -cCAGCgUCGuccagaCGCuCGGGGgGUGCACa -3'
miRNA:   3'- gaGUCG-AGUug----GCG-GUCCCgCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 28378 0.66 0.872417
Target:  5'- -cCAGCgUCGuccagaCGCuCGGGGgGUGCACa -3'
miRNA:   3'- gaGUCG-AGUug----GCG-GUCCCgCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 124442 0.66 0.868015
Target:  5'- uCUCAGUgaaggugggauCCGCCAGGGUcUGCAg -3'
miRNA:   3'- -GAGUCGaguu-------GGCGGUCCCGcAUGUg -5'
33615 5' -56.8 NC_007605.1 + 160613 0.66 0.865039
Target:  5'- -cCAGCUCGGCCaGCaggccGGCGuUGCGCa -3'
miRNA:   3'- gaGUCGAGUUGG-CGguc--CCGC-AUGUG- -5'
33615 5' -56.8 NC_007605.1 + 54274 0.66 0.865039
Target:  5'- aCUC-GCUCAcgaugGCCGUCAGGGCa----- -3'
miRNA:   3'- -GAGuCGAGU-----UGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 37657 0.66 0.865039
Target:  5'- uUCAGCgCGGCCGUCGuGGGCaGUAguccCGCu -3'
miRNA:   3'- gAGUCGaGUUGGCGGU-CCCG-CAU----GUG- -5'
33615 5' -56.8 NC_007605.1 + 114193 0.67 0.855137
Target:  5'- cCUCAGCagcagcccccgccaUCAGCCGCCcGGGCu----- -3'
miRNA:   3'- -GAGUCG--------------AGUUGGCGGuCCCGcaugug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.