miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 5' -56.8 NC_007605.1 + 160688 1.08 0.002751
Target:  5'- gCUCAGCUCAACCGCCAGGGCGUACACc -3'
miRNA:   3'- -GAGUCGAGUUGGCGGUCCCGCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 160613 0.66 0.865039
Target:  5'- -cCAGCUCGGCCaGCaggccGGCGuUGCGCa -3'
miRNA:   3'- gaGUCGAGUUGG-CGguc--CCGC-AUGUG- -5'
33615 5' -56.8 NC_007605.1 + 158636 0.66 0.886528
Target:  5'- gUCuGCgcaccgagaCGGCaCGCCAGGGCGgcuagcaGCACg -3'
miRNA:   3'- gAGuCGa--------GUUG-GCGGUCCCGCa------UGUG- -5'
33615 5' -56.8 NC_007605.1 + 157883 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 154814 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 151745 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 148677 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 145608 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 142539 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 139470 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 136401 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 131193 0.66 0.872417
Target:  5'- -cCAGCgUCGuccagaCGCuCGGGGgGUGCACa -3'
miRNA:   3'- gaGUCG-AGUug----GCG-GUCCCgCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 124442 0.66 0.868015
Target:  5'- uCUCAGUgaaggugggauCCGCCAGGGUcUGCAg -3'
miRNA:   3'- -GAGUCGaguu-------GGCGGUCCCGcAUGUg -5'
33615 5' -56.8 NC_007605.1 + 121099 0.73 0.503139
Target:  5'- -cCGGCUUGGCCGCCccGGCGcACACc -3'
miRNA:   3'- gaGUCGAGUUGGCGGucCCGCaUGUG- -5'
33615 5' -56.8 NC_007605.1 + 118226 0.69 0.749894
Target:  5'- -cCAGCUCAagaucgugguggagGCUGCCAgGGGCcugGCGCu -3'
miRNA:   3'- gaGUCGAGU--------------UGGCGGU-CCCGca-UGUG- -5'
33615 5' -56.8 NC_007605.1 + 114193 0.67 0.855137
Target:  5'- cCUCAGCagcagcccccgccaUCAGCCGCCcGGGCu----- -3'
miRNA:   3'- -GAGUCG--------------AGUUGGCGGuCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 109178 0.66 0.879582
Target:  5'- uCUCGGCUCAucgcagagACCcggGCCcuGGCGgcCGCg -3'
miRNA:   3'- -GAGUCGAGU--------UGG---CGGucCCGCauGUG- -5'
33615 5' -56.8 NC_007605.1 + 70869 0.69 0.743153
Target:  5'- -cCAcGCUCAagACUGCCgggcaGGGGCGUGcCGCg -3'
miRNA:   3'- gaGU-CGAGU--UGGCGG-----UCCCGCAU-GUG- -5'
33615 5' -56.8 NC_007605.1 + 62431 0.66 0.893253
Target:  5'- -cCGGUacgCGGCCGCCAGGGCc----- -3'
miRNA:   3'- gaGUCGa--GUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 59246 0.69 0.752769
Target:  5'- -gCGGCggCAGCCGCCgagagauaaGGGGgGUACGu -3'
miRNA:   3'- gaGUCGa-GUUGGCGG---------UCCCgCAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.