miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 160845 1.08 0.000706
Target:  5'- gCAGCCCGGCCGAGGCCUGCGACGCGGu -3'
miRNA:   3'- -GUCGGGCCGGCUCCGGACGCUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 61261 0.75 0.156769
Target:  5'- gAGCCgGgGCCGGGGCCUGCcACagGCGGc -3'
miRNA:   3'- gUCGGgC-CGGCUCCGGACGcUG--CGCC- -5'
33616 3' -64.8 NC_007605.1 + 103935 0.75 0.164373
Target:  5'- uUAGCCCGGCCGu-GCCUGCGuuggccACgGCGGc -3'
miRNA:   3'- -GUCGGGCCGGCucCGGACGC------UG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 79885 0.75 0.164373
Target:  5'- aGGCCagGGCCGAGGCCccGCGcCuGCGGg -3'
miRNA:   3'- gUCGGg-CCGGCUCCGGa-CGCuG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 158829 0.74 0.19365
Target:  5'- gGGCCUGGCCGGGGCUgaccGCGuccgcccgGCGCaGGa -3'
miRNA:   3'- gUCGGGCCGGCUCCGGa---CGC--------UGCG-CC- -5'
33616 3' -64.8 NC_007605.1 + 59033 0.74 0.202817
Target:  5'- gGGCCUGGUugcaCGAGGCCgUGCcuagGAUGCGGa -3'
miRNA:   3'- gUCGGGCCG----GCUCCGG-ACG----CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 167622 0.73 0.237374
Target:  5'- aUAGCCuccaucaCGGCCGAGuuGUCUGCccGGCGCGGa -3'
miRNA:   3'- -GUCGG-------GCCGGCUC--CGGACG--CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 58059 0.73 0.23791
Target:  5'- gGGCCgcggaGGCCGGGGCC-GCGGaggccggggcCGCGGa -3'
miRNA:   3'- gUCGGg----CCGGCUCCGGaCGCU----------GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 11835 0.72 0.243319
Target:  5'- -cGCCUGGCCcuggugcggGGGGCCUGCGAggaggcgcugGCGGg -3'
miRNA:   3'- guCGGGCCGG---------CUCCGGACGCUg---------CGCC- -5'
33616 3' -64.8 NC_007605.1 + 70882 0.72 0.265983
Target:  5'- -uGCCgGGCaGGGGCgUGCcGCGCGGg -3'
miRNA:   3'- guCGGgCCGgCUCCGgACGcUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 63312 0.72 0.277942
Target:  5'- -cGCCCgGGUCGAGGCagguggggGCcuGACGCGGa -3'
miRNA:   3'- guCGGG-CCGGCUCCGga------CG--CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 160613 0.71 0.284081
Target:  5'- cCAGCUCGGCCaGcAGGCCgGCGuuGCGCa- -3'
miRNA:   3'- -GUCGGGCCGG-C-UCCGGaCGC--UGCGcc -5'
33616 3' -64.8 NC_007605.1 + 91719 0.71 0.289697
Target:  5'- -uGUCCGGCgcgacuuUGGGGCCcGCaGGCGCGGg -3'
miRNA:   3'- guCGGGCCG-------GCUCCGGaCG-CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 20792 0.71 0.296678
Target:  5'- gGGCCCaugaaGGCCcgGGGGCUgGCGAgGCGGc -3'
miRNA:   3'- gUCGGG-----CCGG--CUCCGGaCGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 54158 0.71 0.316381
Target:  5'- gAGCgCCGaGuCCGAGGCCagccuggGCGGgGCGGu -3'
miRNA:   3'- gUCG-GGC-C-GGCUCCGGa------CGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 61715 0.7 0.334943
Target:  5'- gAGCCCGGCCGAGaGCagaaccguggccacCUGCucGAUgGCGGc -3'
miRNA:   3'- gUCGGGCCGGCUC-CG--------------GACG--CUG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 108580 0.69 0.376694
Target:  5'- gCAGCCCugcgcgccagacGGCCgccgcacucagcgagGAGGCCUGCG-CGUGu -3'
miRNA:   3'- -GUCGGG------------CCGG---------------CUCCGGACGCuGCGCc -5'
33616 3' -64.8 NC_007605.1 + 228 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 1288 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 766 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.