miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 228 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 766 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 1288 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 1826 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 6913 0.69 0.396869
Target:  5'- --cCCCGGUCGAGGCgUGgGuCGCGc -3'
miRNA:   3'- gucGGGCCGGCUCCGgACgCuGCGCc -5'
33616 3' -64.8 NC_007605.1 + 7817 0.67 0.498305
Target:  5'- gGGCCgGGUcuCGAGGCCcucUGUGGCGagaccaGGg -3'
miRNA:   3'- gUCGGgCCG--GCUCCGG---ACGCUGCg-----CC- -5'
33616 3' -64.8 NC_007605.1 + 8879 0.66 0.562534
Target:  5'- gGGcCCCGGCCGuGuGCCUGaacACGCu- -3'
miRNA:   3'- gUC-GGGCCGGCuC-CGGACgc-UGCGcc -5'
33616 3' -64.8 NC_007605.1 + 10791 0.66 0.543903
Target:  5'- aGGCCuCGGCCG-GGCUgcUGCuGgGUGGa -3'
miRNA:   3'- gUCGG-GCCGGCuCCGG--ACGcUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 11835 0.72 0.243319
Target:  5'- -cGCCUGGCCcuggugcggGGGGCCUGCGAggaggcgcugGCGGg -3'
miRNA:   3'- guCGGGCCGG---------CUCCGGACGCUg---------CGCC- -5'
33616 3' -64.8 NC_007605.1 + 11927 0.66 0.581331
Target:  5'- gCGGCUcuucugCGG-CGGGGUCUacagcuccucggGCGACGCGGu -3'
miRNA:   3'- -GUCGG------GCCgGCUCCGGA------------CGCUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 13406 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 16475 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 19544 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 20243 0.66 0.571914
Target:  5'- aGGCCCuGGCCGuGGCCagGUacgGGCugGUGGg -3'
miRNA:   3'- gUCGGG-CCGGCuCCGGa-CG---CUG--CGCC- -5'
33616 3' -64.8 NC_007605.1 + 20792 0.71 0.296678
Target:  5'- gGGCCCaugaaGGCCcgGGGGCUgGCGAgGCGGc -3'
miRNA:   3'- gUCGGG-----CCGG--CUCCGGaCGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 20980 0.66 0.562534
Target:  5'- gGGCCgaggagGGCUG-GGUCUGCGACGUu- -3'
miRNA:   3'- gUCGGg-----CCGGCuCCGGACGCUGCGcc -5'
33616 3' -64.8 NC_007605.1 + 22613 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 25682 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 28418 0.69 0.403215
Target:  5'- cCGGCCCGGCguccuugCGGcGGCCUccccccccaugaaGCGggugGCGCGGg -3'
miRNA:   3'- -GUCGGGCCG-------GCU-CCGGA-------------CGC----UGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 28751 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.