miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 22613 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 134583 0.68 0.420993
Target:  5'- -cGCCCcucGCCcauGCUUGCGGCGCGGg -3'
miRNA:   3'- guCGGGc--CGGcucCGGACGCUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 53967 0.68 0.429229
Target:  5'- aAGCCCcGCCGAGuGCUUGCcgccaucuCGUGGg -3'
miRNA:   3'- gUCGGGcCGGCUC-CGGACGcu------GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 62544 0.68 0.445982
Target:  5'- gGGCCgccuccagaUGGCCGAGGCCgaaGCuGCGCcuGGa -3'
miRNA:   3'- gUCGG---------GCCGGCUCCGGa--CGcUGCG--CC- -5'
33616 3' -64.8 NC_007605.1 + 163253 0.68 0.454493
Target:  5'- gAGgCUGGCCGGGGUCucgUGCGAgGCc- -3'
miRNA:   3'- gUCgGGCCGGCUCCGG---ACGCUgCGcc -5'
33616 3' -64.8 NC_007605.1 + 161286 0.68 0.463093
Target:  5'- gCAGCCCaGCCccgGGGGCCUGCa--GCaGGu -3'
miRNA:   3'- -GUCGGGcCGG---CUCCGGACGcugCG-CC- -5'
33616 3' -64.8 NC_007605.1 + 13406 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 16475 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 19544 0.68 0.471776
Target:  5'- uCAGgCCGGCCGgaGGGaCCccgGCGGCcCGGu -3'
miRNA:   3'- -GUCgGGCCGGC--UCC-GGa--CGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 58104 0.68 0.420993
Target:  5'- gGGCCgcggaGGCCGGGGCC-GCGGagGcCGGg -3'
miRNA:   3'- gUCGGg----CCGGCUCCGGaCGCUg-C-GCC- -5'
33616 3' -64.8 NC_007605.1 + 58149 0.69 0.405611
Target:  5'- gGGCCgcagaGGCCGGGGCCgcagaggccggagaCGACgGCGGg -3'
miRNA:   3'- gUCGGg----CCGGCUCCGGac------------GCUG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 61715 0.7 0.334943
Target:  5'- gAGCCCGGCCGAGaGCagaaccguggccacCUGCucGAUgGCGGc -3'
miRNA:   3'- gUCGGGCCGGCUC-CG--------------GACG--CUG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 61261 0.75 0.156769
Target:  5'- gAGCCgGgGCCGGGGCCUGCcACagGCGGc -3'
miRNA:   3'- gUCGGgC-CGGCUCCGGACGcUG--CGCC- -5'
33616 3' -64.8 NC_007605.1 + 158829 0.74 0.19365
Target:  5'- gGGCCUGGCCGGGGCUgaccGCGuccgcccgGCGCaGGa -3'
miRNA:   3'- gUCGGGCCGGCUCCGGa---CGC--------UGCG-CC- -5'
33616 3' -64.8 NC_007605.1 + 59033 0.74 0.202817
Target:  5'- gGGCCUGGUugcaCGAGGCCgUGCcuagGAUGCGGa -3'
miRNA:   3'- gUCGGGCCG----GCUCCGG-ACG----CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 58059 0.73 0.23791
Target:  5'- gGGCCgcggaGGCCGGGGCC-GCGGaggccggggcCGCGGa -3'
miRNA:   3'- gUCGGg----CCGGCUCCGGaCGCU----------GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 63312 0.72 0.277942
Target:  5'- -cGCCCgGGUCGAGGCagguggggGCcuGACGCGGa -3'
miRNA:   3'- guCGGG-CCGGCUCCGga------CG--CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 160613 0.71 0.284081
Target:  5'- cCAGCUCGGCCaGcAGGCCgGCGuuGCGCa- -3'
miRNA:   3'- -GUCGGGCCGG-C-UCCGGaCGC--UGCGcc -5'
33616 3' -64.8 NC_007605.1 + 91719 0.71 0.289697
Target:  5'- -uGUCCGGCgcgacuuUGGGGCCcGCaGGCGCGGg -3'
miRNA:   3'- guCGGGCCG-------GCUCCGGaCG-CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 54158 0.71 0.316381
Target:  5'- gAGCgCCGaGuCCGAGGCCagccuggGCGGgGCGGu -3'
miRNA:   3'- gUCG-GGC-C-GGCUCCGGa------CGCUgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.