miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33617 5' -56.3 NC_007605.1 + 171286 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 170748 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 170226 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 169688 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 160977 1.07 0.003462
Target:  5'- cGCUGGAGGCAAUGGUCGCCAGGGUUUc -3'
miRNA:   3'- -CGACCUCCGUUACCAGCGGUCCCAAA- -5'
33617 5' -56.3 NC_007605.1 + 158525 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 157875 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 157466 0.79 0.256044
Target:  5'- gGCUGGGGGCGAUGGacUGCUGGGGg-- -3'
miRNA:   3'- -CGACCUCCGUUACCa-GCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 157041 0.67 0.829807
Target:  5'- --aGGGGGCGcgaguagcacAUGGUCucggaGCCAGGGa-- -3'
miRNA:   3'- cgaCCUCCGU----------UACCAG-----CGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 155456 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 154806 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 152387 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 151737 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 149318 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 148669 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 146249 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 145600 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 143180 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 142531 0.67 0.854238
Target:  5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3'
miRNA:   3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 140632 0.66 0.897466
Target:  5'- aGCUcGGGGGCGGccgGGUgGCCcaccGGGUc- -3'
miRNA:   3'- -CGA-CCUCCGUUa--CCAgCGGu---CCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.