Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 20508 | 0.75 | 0.430327 |
Target: 5'- aGCUGG-GGCAcgGGcCGCCgAGGGg-- -3' miRNA: 3'- -CGACCuCCGUuaCCaGCGG-UCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 149318 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 155456 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 158525 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 87228 | 0.68 | 0.776268 |
Target: 5'- cGCUGGAGGaccacuGUGGggGCCuGGGa-- -3' miRNA: 3'- -CGACCUCCgu----UACCagCGGuCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 136393 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 142531 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 145600 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 154806 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 146249 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 137042 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 151737 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 136717 | 0.69 | 0.718054 |
Target: 5'- uGCagGGGGGCugacaccgGGcCGCCGGGGUc- -3' miRNA: 3'- -CGa-CCUCCGuua-----CCaGCGGUCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 140111 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 135177 | 0.69 | 0.727996 |
Target: 5'- uGgUGGGGGUggUGGggGCgGGGGUg- -3' miRNA: 3'- -CgACCUCCGuuACCagCGgUCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 148669 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 143180 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 152387 | 0.66 | 0.897466 |
Target: 5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3' miRNA: 3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 117923 | 0.69 | 0.766837 |
Target: 5'- aGCUGGGGGCGcgGGU-GCCuGGc--- -3' miRNA: 3'- -CGACCUCCGUuaCCAgCGGuCCcaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 139462 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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