miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33619 5' -52.9 NC_007605.1 + 74821 0.69 0.913059
Target:  5'- aCGCCGU--CCGCGUCCcUGAGagcuGUCg -3'
miRNA:   3'- gGCGGCGuaGGUGCAGGaACUUg---UAG- -5'
33619 5' -52.9 NC_007605.1 + 57962 0.69 0.934927
Target:  5'- gCGCCGC-UCgACGcCCUUGGugGCGUg -3'
miRNA:   3'- gGCGGCGuAGgUGCaGGAACU--UGUAg -5'
33619 5' -52.9 NC_007605.1 + 111076 0.68 0.938355
Target:  5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3'
miRNA:   3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 69811 0.68 0.939788
Target:  5'- gCGCUcuCGUCCACGUUCaugUUGAACAUg -3'
miRNA:   3'- gGCGGc-GUAGGUGCAGG---AACUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 90244 0.68 0.94441
Target:  5'- uCCGCUGCcgCC-CcUCCUUGAGCc-- -3'
miRNA:   3'- -GGCGGCGuaGGuGcAGGAACUUGuag -5'
33619 5' -52.9 NC_007605.1 + 40033 0.68 0.948793
Target:  5'- gCC-CCGCuugCCugGUCCUgGAGC-UCa -3'
miRNA:   3'- -GGcGGCGua-GGugCAGGAaCUUGuAG- -5'
33619 5' -52.9 NC_007605.1 + 41332 0.68 0.948793
Target:  5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3'
miRNA:   3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 144148 0.68 0.948793
Target:  5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3'
miRNA:   3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 159708 0.68 0.95172
Target:  5'- cCCGCCGCAgaagagCCGC-UCCgUGGccccgggagccacgGCGUCa -3'
miRNA:   3'- -GGCGGCGUa-----GGUGcAGGaACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 101423 0.68 0.95294
Target:  5'- cCCGCCGCuggaguUCCucuagggcgGCGUCCguaGAGCGa- -3'
miRNA:   3'- -GGCGGCGu-----AGG---------UGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 126977 0.68 0.95294
Target:  5'- cCUG-CGCAUCCACGgCCUUGAccugguACAg- -3'
miRNA:   3'- -GGCgGCGUAGGUGCaGGAACU------UGUag -5'
33619 5' -52.9 NC_007605.1 + 103079 0.68 0.955317
Target:  5'- cCCGCCGCAguugcggcagaagCCGCGUCUguaGAUAUa -3'
miRNA:   3'- -GGCGGCGUa------------GGUGCAGGaacUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 122845 0.68 0.956855
Target:  5'- aCCGCCGCAgagCCGCaGUUg--GAGCAg- -3'
miRNA:   3'- -GGCGGCGUa--GGUG-CAGgaaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 118763 0.68 0.960542
Target:  5'- gCCGCCGCcgCCGacUCCUacugGGACAc- -3'
miRNA:   3'- -GGCGGCGuaGGUgcAGGAa---CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 117078 0.68 0.960542
Target:  5'- uUCGCCuGCAcaUCC-CGUCCU---ACAUCa -3'
miRNA:   3'- -GGCGG-CGU--AGGuGCAGGAacuUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 76288 0.67 0.964005
Target:  5'- cCCGCUGaaCAUCCucaagauuuGCGUCCU-GAGCcUCa -3'
miRNA:   3'- -GGCGGC--GUAGG---------UGCAGGAaCUUGuAG- -5'
33619 5' -52.9 NC_007605.1 + 10616 0.67 0.96725
Target:  5'- -gGCCGCuUCUcCGUCCUggcgGAcaGCGUCc -3'
miRNA:   3'- ggCGGCGuAGGuGCAGGAa---CU--UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 97568 0.67 0.96725
Target:  5'- gCGCCGCAUcuaCCGCGUU----AACAUCu -3'
miRNA:   3'- gGCGGCGUA---GGUGCAGgaacUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 39895 0.67 0.969989
Target:  5'- gUCGCUGCAUCCGCcgguaggGUUCgaUGGGCGUg -3'
miRNA:   3'- -GGCGGCGUAGGUG-------CAGGa-ACUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 162066 0.67 0.970282
Target:  5'- -gGCCGCGUCCAgGUCU---GGCAggUCg -3'
miRNA:   3'- ggCGGCGUAGGUgCAGGaacUUGU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.