miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 5' -52.1 NC_007605.1 + 101008 0.66 0.98796
Target:  5'- cUCUGUCuCUUGGCAGcauaUGCGGcaGUAGc -3'
miRNA:   3'- -AGACAG-GGACCGUUuug-ACGUC--CAUC- -5'
33620 5' -52.1 NC_007605.1 + 5115 0.66 0.98796
Target:  5'- -gUGgCCUUGGgGGAGCUGgGGGUGc -3'
miRNA:   3'- agACaGGGACCgUUUUGACgUCCAUc -5'
33620 5' -52.1 NC_007605.1 + 74831 0.66 0.98796
Target:  5'- --cGUCCCUG--AGAGCUGUcguGGGUGGu -3'
miRNA:   3'- agaCAGGGACcgUUUUGACG---UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 45581 0.66 0.98796
Target:  5'- gUCUGcccUCCCUGGCuucuGGACcGCAGcGgAGa -3'
miRNA:   3'- -AGAC---AGGGACCGu---UUUGaCGUC-CaUC- -5'
33620 5' -52.1 NC_007605.1 + 59801 0.66 0.986188
Target:  5'- aUCUGUUCCggauuuagguccaUGGCGGGugUGUauguuuuaauagGGGUGGu -3'
miRNA:   3'- -AGACAGGG-------------ACCGUUUugACG------------UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 58500 0.66 0.986018
Target:  5'- aCUGggcCCCUGGUgcccccacguACUGCAGGa-- -3'
miRNA:   3'- aGACa--GGGACCGuuu-------UGACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 44297 0.66 0.984595
Target:  5'- aUCUGUCCCgaUGGCAGG--UGCAcGGc-- -3'
miRNA:   3'- -AGACAGGG--ACCGUUUugACGU-CCauc -5'
33620 5' -52.1 NC_007605.1 + 122497 0.66 0.984595
Target:  5'- --cGUCCCUGGUAAAAUggugGCugaAGGcUGGc -3'
miRNA:   3'- agaCAGGGACCGUUUUGa---CG---UCC-AUC- -5'
33620 5' -52.1 NC_007605.1 + 142643 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 145711 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 151849 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 136505 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 139574 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 154918 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 157987 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 148780 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 45078 0.66 0.981424
Target:  5'- -gUGUCCUUGGCGuccgggugggccccgAGGCUcucGCAGaGUGGg -3'
miRNA:   3'- agACAGGGACCGU---------------UUUGA---CGUC-CAUC- -5'
33620 5' -52.1 NC_007605.1 + 119806 0.66 0.981424
Target:  5'- uUCcgGUCCCUGGUggagaccaucucgcuGAAuuuuCUGCAGGa-- -3'
miRNA:   3'- -AGa-CAGGGACCG---------------UUUu---GACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 38607 0.66 0.978269
Target:  5'- -gUGUCCCUgGGCAGucggGCGGGg-- -3'
miRNA:   3'- agACAGGGA-CCGUUuugaCGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 39774 0.67 0.975784
Target:  5'- --gGUUCCUGGCGcuccACUGCaccuggaaugcaGGGUGGg -3'
miRNA:   3'- agaCAGGGACCGUuu--UGACG------------UCCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.