Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33621 | 3' | -58.9 | NC_007605.1 | + | 34976 | 0.66 | 0.794901 |
Target: 5'- cACGgguggaGGGGGGCCaaagAGGCccGGCAa---- -3' miRNA: 3'- -UGCa-----CCCCCCGG----UCCGa-CCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 11850 | 0.66 | 0.794901 |
Target: 5'- ---cGGGGGGCCugcgaggaGGcGCUGGCGg---- -3' miRNA: 3'- ugcaCCCCCCGG--------UC-CGACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 141715 | 0.66 | 0.76736 |
Target: 5'- uACGggGGGcccGGGCCGGGUUGGUc----- -3' miRNA: 3'- -UGCa-CCC---CCCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 153413 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 144206 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 138068 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 147275 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 156482 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 150344 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 141137 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 159551 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 83311 | 0.67 | 0.738751 |
Target: 5'- aGCcUGGGGGGCCGgcGGCUccuGGUAUc--- -3' miRNA: 3'- -UGcACCCCCCGGU--CCGA---CCGUAauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 145594 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 151731 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 157869 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 139456 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 154800 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 148663 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 142525 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 136387 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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