miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 169298 0.66 0.80613
Target:  5'- gCCUCgUgucagcGGUCUCuggcccgGCCAcCAGAaGGGCCc -3'
miRNA:   3'- -GGAGgGa-----CCAGAG-------CGGU-GUCU-CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 168910 0.66 0.780997
Target:  5'- gCCgCCCUGGUCUgaaagGCCuguugGCGccGGGCCg -3'
miRNA:   3'- -GGaGGGACCAGAg----CGG-----UGUcuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 167402 0.66 0.806976
Target:  5'- cCCUCCCUGGaUCUUGCCAUcccc-GCa -3'
miRNA:   3'- -GGAGGGACC-AGAGCGGUGucuccCGg -5'
33622 3' -60.1 NC_007605.1 + 165786 0.67 0.716474
Target:  5'- uCCgCCCaGGUCUUGCCAauuGGGGUg -3'
miRNA:   3'- -GGaGGGaCCAGAGCGGUgucUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 164774 0.66 0.798452
Target:  5'- gCCUCa-UGGUCUCGUCAggcCAGcucacGGGCUu -3'
miRNA:   3'- -GGAGggACCAGAGCGGU---GUCu----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 164319 0.66 0.798452
Target:  5'- gCCUCgcaaaCCaGaGUCU-GCgAUAGAGGGCCa -3'
miRNA:   3'- -GGAG-----GGaC-CAGAgCGgUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 163796 1.13 0.000855
Target:  5'- aCCUCCCUGGUCUCGCCACAGAGGGCCu -3'
miRNA:   3'- -GGAGGGACCAGAGCGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 159264 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 156219 0.68 0.681856
Target:  5'- -gUCCCUGGcugccugcaaugcucUgCUgGCCACuGAGGGUCc -3'
miRNA:   3'- ggAGGGACC---------------A-GAgCGGUGuCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 156195 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 153126 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 151362 0.66 0.787165
Target:  5'- aCCUCCCagagGGagcccaccagcccgUacCUgGCCACGGccAGGGCCu -3'
miRNA:   3'- -GGAGGGa---CC--------------A--GAgCGGUGUC--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 150977 0.71 0.507968
Target:  5'- aCUCCUUGuuagguugauagaauGUCgguaccaCGCCACGGGGGGCg -3'
miRNA:   3'- gGAGGGAC---------------CAGa------GCGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 150884 0.72 0.450146
Target:  5'- cCCagCCUGGUCa-GCCGCAGAGGaaGCa -3'
miRNA:   3'- -GGagGGACCAGagCGGUGUCUCC--CGg -5'
33622 3' -60.1 NC_007605.1 + 150057 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 146988 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 145540 0.66 0.789789
Target:  5'- cCCUCCCcuuaacagggGGUCUCGC----GGGGuGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGAGCGguguCUCC-CGG- -5'
33622 3' -60.1 NC_007605.1 + 144276 0.66 0.789789
Target:  5'- aCCUCCCaaGGUCUCucacccuggGUaCACAGguGGGGCg -3'
miRNA:   3'- -GGAGGGa-CCAGAG---------CG-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 143919 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 140850 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.