miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 83259 0.75 0.289616
Target:  5'- -aUCCCUGGUauggaGCCugGGGGGGCg -3'
miRNA:   3'- ggAGGGACCAgag--CGGugUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 156195 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 11806 0.68 0.658484
Target:  5'- gCCUCUCUGcccuGUUugcccgggagcgUCGCCuggcccugguGCGGGGGGCCu -3'
miRNA:   3'- -GGAGGGAC----CAG------------AGCGG----------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 8852 0.66 0.806976
Target:  5'- -gUCCCaUGuG-CUCGCUcuGC-GAGGGCCg -3'
miRNA:   3'- ggAGGG-AC-CaGAGCGG--UGuCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 599 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 1659 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 105978 0.69 0.593932
Target:  5'- aUCUUCCUGGUgUgaaGuCCaaucagacuacugguGCAGAGGGCCg -3'
miRNA:   3'- -GGAGGGACCAgAg--C-GG---------------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 17721 0.69 0.613462
Target:  5'- cCCUCCCcGGa--CGCCugGgcgccccucaaccccGAGGGCCa -3'
miRNA:   3'- -GGAGGGaCCagaGCGGugU---------------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 137781 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 153126 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 143919 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34537 0.69 0.618354
Target:  5'- gCUCCCgccucagggaucgUGGaCUCgGCCACAcagugggcuucGGGGGCCu -3'
miRNA:   3'- gGAGGG-------------ACCaGAG-CGGUGU-----------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 83298 0.74 0.344999
Target:  5'- -aUCCCUGGUauggaGCCugGG-GGGCCg -3'
miRNA:   3'- ggAGGGACCAgag--CGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 146988 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 78088 0.71 0.513555
Target:  5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3'
miRNA:   3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 55479 0.69 0.615418
Target:  5'- cCCggCCCUGGUuuccuuuguguuccCUUGCUGCcugaugcuguuuaGGGGGGCCu -3'
miRNA:   3'- -GGa-GGGACCA--------------GAGCGGUG-------------UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 150057 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 159264 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 61 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 59570 0.7 0.57935
Target:  5'- aCCUCCCUGGUgccugaagacccaCUC-CCuuGGAuguGGGCCc -3'
miRNA:   3'- -GGAGGGACCA-------------GAGcGGugUCU---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.