Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 5' | -58.3 | NC_007605.1 | + | 143635 | 0.66 | 0.858467 |
Target: 5'- -cGCCCCUauauaccAGGUGGGuGGAGCUAg -3' miRNA: 3'- gcCGGGGAguu----UCUACCCcCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 28243 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 31312 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 101166 | 0.66 | 0.858467 |
Target: 5'- gCGGCCCCggcggUAGAG-UGGGGuacGcAGCCAg -3' miRNA: 3'- -GCCGGGGa----GUUUCuACCCCc--C-UUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 153892 | 0.66 | 0.85922 |
Target: 5'- uGGCCCUcggggUUGAGGGgcgcccaggcguccgGGGaGGGGGCCAg -3' miRNA: 3'- gCCGGGG-----AGUUUCUa--------------CCC-CCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 137012 | 0.66 | 0.826837 |
Target: 5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3' miRNA: 3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 169966 | 0.66 | 0.818489 |
Target: 5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3' miRNA: 3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 171026 | 0.66 | 0.818489 |
Target: 5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3' miRNA: 3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 171564 | 0.66 | 0.818489 |
Target: 5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3' miRNA: 3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 40819 | 0.66 | 0.858467 |
Target: 5'- -cGCCCCUauauaccAGGUGGGuGGAGCUAg -3' miRNA: 3'- gcCGGGGAguu----UCUACCCcCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 25174 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 34381 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 19036 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 170504 | 0.66 | 0.818489 |
Target: 5'- aGGCCCCcCAggaAAGAcccccgUGGggcauGGGGGGCCGc -3' miRNA: 3'- gCCGGGGaGU---UUCU------ACC-----CCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 9513 | 0.66 | 0.82435 |
Target: 5'- gGGgUCCUCAcggccaaggaggccAAGGUGGugcauGGGGAGCCc -3' miRNA: 3'- gCCgGGGAGU--------------UUCUACC-----CCCCUUGGu -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 63074 | 0.66 | 0.826837 |
Target: 5'- uGGCCCCgggGGAGGUGGcGGucGCCGg -3' miRNA: 3'- gCCGGGGag-UUUCUACCcCCcuUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 22105 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 108823 | 0.66 | 0.858467 |
Target: 5'- --aCCCCUggCAGAGGUGGacGGGGGGCUc -3' miRNA: 3'- gccGGGGA--GUUUCUACC--CCCCUUGGu -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 157351 | 0.66 | 0.82435 |
Target: 5'- gGGUgCC-CAGGGAcuucccgggggccgUGGGGGGcACCGg -3' miRNA: 3'- gCCGgGGaGUUUCU--------------ACCCCCCuUGGU- -5' |
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33622 | 5' | -58.3 | NC_007605.1 | + | 12899 | 0.66 | 0.858467 |
Target: 5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3' miRNA: 3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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