miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 5' -58.3 NC_007605.1 + 2952 0.67 0.768964
Target:  5'- aCGGCCCCUCcgugccccuacgccgAAAGuucAUGGGcacaGGGGCCGu -3'
miRNA:   3'- -GCCGGGGAG---------------UUUC---UACCCc---CCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 4452 0.69 0.657467
Target:  5'- aGGCCCCUUAcuuccacAGGGuacUGGcauaccagcGGGGGACCAc -3'
miRNA:   3'- gCCGGGGAGU-------UUCU---ACC---------CCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 9513 0.66 0.82435
Target:  5'- gGGgUCCUCAcggccaaggaggccAAGGUGGugcauGGGGAGCCc -3'
miRNA:   3'- gCCgGGGAGU--------------UUCUACC-----CCCCUUGGu -5'
33622 5' -58.3 NC_007605.1 + 11263 0.74 0.419577
Target:  5'- gCGGCCCCUaa-----GGGGGGGACUAa -3'
miRNA:   3'- -GCCGGGGAguuucuaCCCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 12899 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 19036 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 22105 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 25174 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 27198 0.68 0.70798
Target:  5'- uGGCCCCUacaggcuccCAAGGcgGGGGuuGGGcCCAg -3'
miRNA:   3'- gCCGGGGA---------GUUUCuaCCCC--CCUuGGU- -5'
33622 5' -58.3 NC_007605.1 + 28243 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 31312 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 34381 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 38330 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38455 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38580 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38705 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38830 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38954 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 39079 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 39204 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.