miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 5' -58.3 NC_007605.1 + 163830 1.08 0.002224
Target:  5'- cCGGCCCCUCAAAGAUGGGGGGAACCAu -3'
miRNA:   3'- -GCCGGGGAGUUUCUACCCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 40310 0.76 0.310384
Target:  5'- gGGCCCggCGGGGGUGGGGGGugcgcucccaGGCCGg -3'
miRNA:   3'- gCCGGGgaGUUUCUACCCCCC----------UUGGU- -5'
33622 5' -58.3 NC_007605.1 + 11263 0.74 0.419577
Target:  5'- gCGGCCCCUaa-----GGGGGGGACUAa -3'
miRNA:   3'- -GCCGGGGAguuucuaCCCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 89790 0.72 0.488722
Target:  5'- aCGGCCCCUCcauugguugcuGAGGGgauacugggucaacUGGGGGGGcugcACCu -3'
miRNA:   3'- -GCCGGGGAG-----------UUUCU--------------ACCCCCCU----UGGu -5'
33622 5' -58.3 NC_007605.1 + 109844 0.72 0.499985
Target:  5'- uGGCCgCUCGugugcagGAGgcGGcGGGGAGCCGg -3'
miRNA:   3'- gCCGGgGAGU-------UUCuaCC-CCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 162193 0.72 0.500928
Target:  5'- gGGCCCUguuccaCAuguGAcacgGGGGGGGACCAa -3'
miRNA:   3'- gCCGGGGa-----GUuu-CUa---CCCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 47433 0.72 0.526691
Target:  5'- aCGuGCCCCcCGAGacccgggagacgguGGUGGGGGGAGCa- -3'
miRNA:   3'- -GC-CGGGGaGUUU--------------CUACCCCCCUUGgu -5'
33622 5' -58.3 NC_007605.1 + 105131 0.71 0.538302
Target:  5'- uGGCUCCUCugAAGGAUGGGcGGAgguugguGCCAc -3'
miRNA:   3'- gCCGGGGAG--UUUCUACCCcCCU-------UGGU- -5'
33622 5' -58.3 NC_007605.1 + 95646 0.71 0.578565
Target:  5'- gCGGCaguggaCCUCAAAGAagaGGGGGuGAuaACCAu -3'
miRNA:   3'- -GCCGg-----GGAGUUUCUa--CCCCC-CU--UGGU- -5'
33622 5' -58.3 NC_007605.1 + 170361 0.71 0.588494
Target:  5'- -aGCCCC-CAAGGggGGcGGGGAGCgGg -3'
miRNA:   3'- gcCGGGGaGUUUCuaCC-CCCCUUGgU- -5'
33622 5' -58.3 NC_007605.1 + 170883 0.71 0.588494
Target:  5'- -aGCCCC-CAAGGggGGcGGGGAGCgGg -3'
miRNA:   3'- gcCGGGGaGUUUCuaCC-CCCCUUGgU- -5'
33622 5' -58.3 NC_007605.1 + 171421 0.71 0.588494
Target:  5'- -aGCCCC-CAAGGggGGcGGGGAGCgGg -3'
miRNA:   3'- gcCGGGGaGUUUCuaCC-CCCCUUGgU- -5'
33622 5' -58.3 NC_007605.1 + 169823 0.71 0.588494
Target:  5'- -aGCCCC-CAAGGggGGcGGGGAGCgGg -3'
miRNA:   3'- gcCGGGGaGUUUCuaCC-CCCCUUGgU- -5'
33622 5' -58.3 NC_007605.1 + 153748 0.7 0.638462
Target:  5'- uCGGCCuCCagGGAGAUGGGGG---CCAc -3'
miRNA:   3'- -GCCGG-GGagUUUCUACCCCCcuuGGU- -5'
33622 5' -58.3 NC_007605.1 + 4452 0.69 0.657467
Target:  5'- aGGCCCCUUAcuuccacAGGGuacUGGcauaccagcGGGGGACCAc -3'
miRNA:   3'- gCCGGGGAGU-------UUCU---ACC---------CCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 166045 0.69 0.677396
Target:  5'- gGGUgCC-CAAAGgcGGGGGGAaugugcucccauuGCCAa -3'
miRNA:   3'- gCCGgGGaGUUUCuaCCCCCCU-------------UGGU- -5'
33622 5' -58.3 NC_007605.1 + 51974 0.69 0.6883
Target:  5'- aCGGCCgCCUCAaaaacgGAGAcGGGGauggugucaccGGAGCCc -3'
miRNA:   3'- -GCCGG-GGAGU------UUCUaCCCC-----------CCUUGGu -5'
33622 5' -58.3 NC_007605.1 + 38455 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 38580 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5'
33622 5' -58.3 NC_007605.1 + 39329 0.68 0.70798
Target:  5'- -uGCCCCgcuccGGGUGGGGGGuGGCCc -3'
miRNA:   3'- gcCGGGGaguu-UCUACCCCCC-UUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.