Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 3' | -58 | NC_007605.1 | + | 122628 | 0.66 | 0.845857 |
Target: 5'- cUGuCCGCAAaguuaaauacAGGAGCuGCcugACCGUCAc -3' miRNA: 3'- uAC-GGCGUU----------UCCUCGcCG---UGGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 60861 | 0.66 | 0.841045 |
Target: 5'- -cGCCuggggggacuccccgGCAucGGAGgGGCcCCGUCAu -3' miRNA: 3'- uaCGG---------------CGUuuCCUCgCCGuGGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 136314 | 0.66 | 0.8378 |
Target: 5'- -aGCCuGCGGAGGuuCGGCcGCCG-CGGg -3' miRNA: 3'- uaCGG-CGUUUCCucGCCG-UGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 109495 | 0.66 | 0.821141 |
Target: 5'- gGUGgaGCAcaguGGGGGCGGgGCCGgCGGg -3' miRNA: 3'- -UACggCGUu---UCCUCGCCgUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 37047 | 0.67 | 0.794901 |
Target: 5'- -cGCCGCAAgcaugGGcGAGgGGCGCCc-CAGg -3' miRNA: 3'- uaCGGCGUU-----UC-CUCgCCGUGGcaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 11616 | 0.67 | 0.785854 |
Target: 5'- -gGCC-CAGAGGAG-GGCGCgGUCc- -3' miRNA: 3'- uaCGGcGUUUCCUCgCCGUGgCAGuc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 53802 | 0.67 | 0.77667 |
Target: 5'- uUGCCGguGuAGGuGUaGGUACCGUCGc -3' miRNA: 3'- uACGGCguU-UCCuCG-CCGUGGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 97527 | 0.67 | 0.77667 |
Target: 5'- -gGCCGCGu-GGcGUGGCugCGUCc- -3' miRNA: 3'- uaCGGCGUuuCCuCGCCGugGCAGuc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 49565 | 0.67 | 0.75793 |
Target: 5'- uUGCagaGUAccGGGAGUGGCACCGcUCGc -3' miRNA: 3'- uACGg--CGUu-UCCUCGCCGUGGC-AGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 136714 | 0.67 | 0.748391 |
Target: 5'- -gGCUGCAGGGGGGCuGaCACCGggccgcCGGg -3' miRNA: 3'- uaCGGCGUUUCCUCGcC-GUGGCa-----GUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 152373 | 0.67 | 0.748391 |
Target: 5'- cAUGCCGCuGAGGAa-GGCGCUGUaGGa -3' miRNA: 3'- -UACGGCGuUUCCUcgCCGUGGCAgUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 165574 | 0.68 | 0.738751 |
Target: 5'- aGUGUgGCAuugGGGGGGUGGCAUUG-CGGg -3' miRNA: 3'- -UACGgCGU---UUCCUCGCCGUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 64107 | 0.68 | 0.738751 |
Target: 5'- uGUGCCGCAggAAGGAGgcCaGCcacaccuCCGUCAGa -3' miRNA: 3'- -UACGGCGU--UUCCUC--GcCGu------GGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 96547 | 0.68 | 0.729019 |
Target: 5'- -gGCCGaggcuGAGGGGGCGGuCACCGaUgAGa -3' miRNA: 3'- uaCGGCg----UUUCCUCGCC-GUGGC-AgUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 99930 | 0.68 | 0.729019 |
Target: 5'- -gGCCGUGAAGGAGaGGC-UCGUCuGa -3' miRNA: 3'- uaCGGCGUUUCCUCgCCGuGGCAGuC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 61439 | 0.68 | 0.719205 |
Target: 5'- -cGUCGCGGcGGGGGCGGCGgCGggcgUAGa -3' miRNA: 3'- uaCGGCGUU-UCCUCGCCGUgGCa---GUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 21412 | 0.68 | 0.719205 |
Target: 5'- -aGuuGUAuuGGGGCcGCACCGUCGc -3' miRNA: 3'- uaCggCGUuuCCUCGcCGUGGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 86451 | 0.68 | 0.719205 |
Target: 5'- cUGCCGgGGAacGGGUGGCACC-UCAGg -3' miRNA: 3'- uACGGCgUUUc-CUCGCCGUGGcAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 85700 | 0.68 | 0.699365 |
Target: 5'- gAUGCCGCAcgGGGGGGCcucGCAcucucCCGUCGu -3' miRNA: 3'- -UACGGCGU--UUCCUCGc--CGU-----GGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 58090 | 0.68 | 0.689357 |
Target: 5'- -gGCCGCGGAGGc-CGGgGCCG-CGGa -3' miRNA: 3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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