Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 5' | -60.6 | NC_007605.1 | + | 169068 | 0.69 | 0.570033 |
Target: 5'- uGUuuGUGUuagaaaAGCgGGUCCCCGGggggcaagcUGUGGg -3' miRNA: 3'- -CGggCGCA------UCGgCCAGGGGUC---------ACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 164013 | 1.1 | 0.001197 |
Target: 5'- gGCCCGCGUAGCCGGUCCCCAGUGUGGc -3' miRNA: 3'- -CGGGCGCAUCGGCCAGGGGUCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 158175 | 0.69 | 0.608674 |
Target: 5'- cCCCGU-UGGCCaGGcCCCCGGUG-GGc -3' miRNA: 3'- cGGGCGcAUCGG-CCaGGGGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 157871 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 154802 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 151733 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 148665 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 145596 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 142527 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 139458 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 136556 | 0.66 | 0.79651 |
Target: 5'- gGCCCGCG-GGCgGGgaCCCGG-GUGc -3' miRNA: 3'- -CGGGCGCaUCGgCCagGGGUCaCACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 136389 | 0.66 | 0.79651 |
Target: 5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3' miRNA: 3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 127157 | 0.68 | 0.628114 |
Target: 5'- gGCCUcggcgcauaGCGUgaAGUCGGUgUCCAgGUGUGGa -3' miRNA: 3'- -CGGG---------CGCA--UCGGCCAgGGGU-CACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 115870 | 0.66 | 0.770239 |
Target: 5'- gGCCgGUGUGGCCucGG-CCCCAGg---- -3' miRNA: 3'- -CGGgCGCAUCGG--CCaGGGGUCacacc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 115346 | 0.66 | 0.779118 |
Target: 5'- aGCCCcagGCaaagGGCCGGaCuCCCAGcGUGGc -3' miRNA: 3'- -CGGG---CGca--UCGGCCaG-GGGUCaCACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 110189 | 0.66 | 0.746655 |
Target: 5'- cGCCCGCc--GCCGc-CCCCgccgcgacggcugugGGUGUGGg -3' miRNA: 3'- -CGGGCGcauCGGCcaGGGG---------------UCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 98200 | 0.68 | 0.657277 |
Target: 5'- gGCCUG---GGCCGGg-CUCAGUGUGGa -3' miRNA: 3'- -CGGGCgcaUCGGCCagGGGUCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 91922 | 0.68 | 0.666971 |
Target: 5'- cUCCGaGUAGCgGG-CCUCGGUGUGa -3' miRNA: 3'- cGGGCgCAUCGgCCaGGGGUCACACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 83311 | 0.67 | 0.733692 |
Target: 5'- aGCCUGgGgGGCCGGcggcuccugguaUCCCUGGUaUGGa -3' miRNA: 3'- -CGGGCgCaUCGGCC------------AGGGGUCAcACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 83234 | 0.71 | 0.467951 |
Target: 5'- aGCCCGUG-GGCCGGcggcuccugguaUCCCUGGUaUGGa -3' miRNA: 3'- -CGGGCGCaUCGGCC------------AGGGGUCAcACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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