miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 5' -70.5 NC_007605.1 + 50406 0.66 0.326254
Target:  5'- cCCCGUGGCCUuuggcacgggCCUGGCaCCCaCCGCu- -3'
miRNA:   3'- -GGGCGCCGGG----------GGGUCGgGGG-GGCGug -5'
33627 5' -70.5 NC_007605.1 + 25002 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 17619 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 15796 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 23757 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 31140 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 159519 0.66 0.326254
Target:  5'- gCCGgGGCaCCUCCgGGCUCUCCCGgGa -3'
miRNA:   3'- gGGCgCCG-GGGGG-UCGGGGGGGCgUg -5'
33627 5' -70.5 NC_007605.1 + 18865 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 12727 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 29895 0.66 0.311184
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUg -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 20688 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 34209 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 5591 0.66 0.31312
Target:  5'- cCCCGCcuuugGGCaCCCCacgggguGCuCCCCCUGgACa -3'
miRNA:   3'- -GGGCG-----CCG-GGGGgu-----CG-GGGGGGCgUG- -5'
33627 5' -70.5 NC_007605.1 + 28071 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 48850 0.66 0.346714
Target:  5'- gCUgGCGGCCCCgaauccgggCAGUgCUgCCGCACa -3'
miRNA:   3'- -GGgCGCCGGGGg--------GUCGgGGgGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 162800 0.66 0.337737
Target:  5'- aCUgGCGGCCgCCCCcGCCacguagcugcccguCUCCgGCACc -3'
miRNA:   3'- -GGgCGCCGG-GGGGuCGG--------------GGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 151121 0.66 0.312474
Target:  5'- cCCCucgGCGGCCcgugCCCCAGCUCCgUCacgggggGCGCa -3'
miRNA:   3'- -GGG---CGCCGG----GGGGUCGGGGgGG-------CGUG- -5'
33627 5' -70.5 NC_007605.1 + 60289 0.66 0.332973
Target:  5'- gCCGUGGCCagggCCCaccuggcggcGGCgUCCCgGCACa -3'
miRNA:   3'- gGGCGCCGGg---GGG----------UCGgGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 14550 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 123867 0.66 0.353735
Target:  5'- gCCCaGCggacaaGGCCCCCgGGCCUCUCCa--- -3'
miRNA:   3'- -GGG-CG------CCGGGGGgUCGGGGGGGcgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.