miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 5' -70.5 NC_007605.1 + 39 0.67 0.294176
Target:  5'- cCCCGCcaacaccCCCCCCGauGCCCCCCgGgGg -3'
miRNA:   3'- -GGGCGcc-----GGGGGGU--CGGGGGGgCgUg -5'
33627 5' -70.5 NC_007605.1 + 309 0.75 0.084037
Target:  5'- uCCCGCGccGCCCCCCGcucccGCCCCCaCCaGaCACa -3'
miRNA:   3'- -GGGCGC--CGGGGGGU-----CGGGGG-GG-C-GUG- -5'
33627 5' -70.5 NC_007605.1 + 390 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 462 0.76 0.069145
Target:  5'- gCCCGCGGaccccgaCCCCCCGccGCCCgCCCGC-Cg -3'
miRNA:   3'- -GGGCGCC-------GGGGGGU--CGGGgGGGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 570 0.76 0.069312
Target:  5'- -gCGCGGCCCCCCAuGCCCCaCCCc--- -3'
miRNA:   3'- ggGCGCCGGGGGGU-CGGGG-GGGcgug -5'
33627 5' -70.5 NC_007605.1 + 847 0.75 0.084037
Target:  5'- uCCCGCGccGCCCCCCGcucccGCCCCCaCCaGaCACa -3'
miRNA:   3'- -GGGCGC--CGGGGGGU-----CGGGGG-GG-C-GUG- -5'
33627 5' -70.5 NC_007605.1 + 928 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 984 0.77 0.059786
Target:  5'- gCCCGCaGCCCCCgGGCccgcggaccccgaCCCCCCGC-Cg -3'
miRNA:   3'- -GGGCGcCGGGGGgUCG-------------GGGGGGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 1107 0.71 0.148017
Target:  5'- -gCGCGGCCCCCCAuGCCCCa-CGgGg -3'
miRNA:   3'- ggGCGCCGGGGGGU-CGGGGggGCgUg -5'
33627 5' -70.5 NC_007605.1 + 1369 0.75 0.084037
Target:  5'- uCCCGCGccGCCCCCCGcucccGCCCCCaCCaGaCACa -3'
miRNA:   3'- -GGGCGC--CGGGGGGU-----CGGGGG-GG-C-GUG- -5'
33627 5' -70.5 NC_007605.1 + 1450 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 1522 0.76 0.069145
Target:  5'- gCCCGCGGaccccgaCCCCCCGccGCCCgCCCGC-Cg -3'
miRNA:   3'- -GGGCGCC-------GGGGGGU--CGGGgGGGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 1630 0.76 0.069312
Target:  5'- -gCGCGGCCCCCCAuGCCCCaCCCc--- -3'
miRNA:   3'- ggGCGCCGGGGGGU-CGGGG-GGGcgug -5'
33627 5' -70.5 NC_007605.1 + 1907 0.75 0.084037
Target:  5'- uCCCGCGccGCCCCCCGcucccGCCCCCaCCaGaCACa -3'
miRNA:   3'- -GGGCGC--CGGGGGGU-----CGGGGG-GG-C-GUG- -5'
33627 5' -70.5 NC_007605.1 + 1988 0.78 0.045827
Target:  5'- gCCCGCGcgcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC---CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 2059 0.76 0.069145
Target:  5'- gCCCGCGGaccccgaCCCCCCGccGCCCgCCCGC-Cg -3'
miRNA:   3'- -GGGCGCC-------GGGGGGU--CGGGgGGGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 2167 0.79 0.038597
Target:  5'- -gCGCGGCCCCCCAuGCCCCagcaagCCGCAg -3'
miRNA:   3'- ggGCGCCGGGGGGU-CGGGGg-----GGCGUg -5'
33627 5' -70.5 NC_007605.1 + 2837 0.72 0.128747
Target:  5'- gCCCGCgacGGCCCCCUcgaGGaCCCCCCCu--- -3'
miRNA:   3'- -GGGCG---CCGGGGGG---UC-GGGGGGGcgug -5'
33627 5' -70.5 NC_007605.1 + 2948 0.67 0.282051
Target:  5'- aCUGaCGGCCCCuCCGuGCCCCUaCGC-Cg -3'
miRNA:   3'- gGGC-GCCGGGG-GGU-CGGGGGgGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 3057 0.7 0.169879
Target:  5'- -aCGCGcGCCCCCCGGgCCCCa-GUGCu -3'
miRNA:   3'- ggGCGC-CGGGGGGUCgGGGGggCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.